View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_12 (Length: 432)
Name: NF21179_low_12
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 217 - 416
Target Start/End: Original strand, 3272134 - 3272333
Alignment:
| Q |
217 |
taaacaaagtctctttagtgattgacacaagaccctttaggtgaaatgatattagtggctgttccatgaacattgttgcactttacagaagctggtttct |
316 |
Q |
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| T |
3272134 |
taaacaaagtctctttagtgattgacacaagaccctttaggtgaaatgatattagtggctgttccatgaacatttttacactttacagaagctggtttct |
3272233 |
T |
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| Q |
317 |
ttcgattaattgaagtaattttgatttgattaagggtgatatcataacaccctatcttagcacaatccaatacaatagcattttcatcaatacatgttcc |
416 |
Q |
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| T |
3272234 |
ttcgattaattgaagtaattttgatttgattaagggtgatatcataacaccctatcttagcacaatccaatacaatagcattttcatcaatacatgttcc |
3272333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 3271725 - 3271926
Alignment:
| Q |
19 |
tagaagaaaggaagagtatttgtaggtagagagaatcacatagactgtatctacatcagatgattttgtacaaacccactatctcattgaaacaaatttt |
118 |
Q |
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| T |
3271725 |
tagaagaaaggaagagtatttgtgggtagagagaatcacatagactgtatctacatcagatgattttgtacaaacccactatctcattgaaacaaatttt |
3271824 |
T |
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| Q |
119 |
tagtatatatatttggtacaaagaaagtcatggaagtgcaaattaatagtatgtggacnnnnnnnnacttattgagcaaaaagcaaagcaattttattta |
218 |
Q |
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| T |
3271825 |
tagtatatatatttggtacaaagaaagtcatggaagtgcaaattaatagtgtgtggacttttttttacttattgagcaaaaagcaaagcaattttattta |
3271924 |
T |
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| Q |
219 |
aa |
220 |
Q |
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| T |
3271925 |
aa |
3271926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 416
Target Start/End: Original strand, 3277900 - 3278061
Alignment:
| Q |
255 |
aggtgaaatgatattagtggctgttccatgaacattgttgcactttacagaagctggtttctttcgattaattgaagtaattttgatttgattaagggtg |
354 |
Q |
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||||| |||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3277900 |
aggtgcaatgatatcattggctgttccatgaacatttttgcactttaccgaagctggtttctttcgattaattgaagtaatgttgatttgattaagagta |
3277999 |
T |
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| Q |
355 |
atatcataacaccctatcttagcacaatccaatacaatagcattttcatcaatacatgttcc |
416 |
Q |
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| T |
3278000 |
atattgtaacatcctatcttggcacaatccaacacaacagcatcttccccaatacatgttcc |
3278061 |
T |
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