View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_13 (Length: 428)
Name: NF21179_low_13
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 42240473 - 42240264
Alignment:
| Q |
34 |
aagaaacgacggaatctccaaaatcaagatttccgtccaatgtgcataaggcgccgcaaaaccaatcgaagcttgatattcatgatgaactcggtgaatc |
133 |
Q |
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| T |
42240473 |
aagaaaagatggaatccccaaaatcaagatctccgcccaatgtgcataaggcgccgcaaatccaatcggagcttgatattcatgatgaactcgatgaatc |
42240374 |
T |
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| Q |
134 |
atttcataaccccatttattatgcagaaatctatggatccagtcatttgtataatcctccaccaaaaaatacaccaataattgagataatatctcaaatc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
42240373 |
ttttcataaccccatttattatgcagaaatctatggatccagtaattcgtataatcctccaccaaaaaatacaccaataattgcgatagtatctcaaatc |
42240274 |
T |
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| Q |
234 |
cagacggtaa |
243 |
Q |
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|||||||||| |
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| T |
42240273 |
cagacggtaa |
42240264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 42240169 - 42240094
Alignment:
| Q |
336 |
aactaatttaattgtgattgtgattacattgatggaagggtaagaaatgaattgaagaggaccaacaacaaggaag |
411 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42240169 |
aactaatttaattgtgattgtgattaccttgatggaagggtaagaaatgagttgaagaggaccaacaacaaggaag |
42240094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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