View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_15 (Length: 356)
Name: NF21179_low_15
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 49707705 - 49707368
Alignment:
| Q |
13 |
aatattcaatatcaacatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaatttcaaaagaattccaccact |
112 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49707705 |
aataatcaatatcaatatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaattccaaaagaattccaccact |
49707606 |
T |
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| Q |
113 |
atctatgagagcgctcaactactgtaaatggattggaacaacaaagatttgagatatattgcaataattttaattttgatggatatagtaataaagtagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49707605 |
atctatgagagcgctcaactactgtaaatggattggaacaacaaaaatttgagatatattgcaataattttaattttgatggatatagtaataaagtagt |
49707506 |
T |
|
| Q |
213 |
gattttgagatgttgatcttagatctcagttgggttctgtgcgtgagcataaaagaattggtgaa------------ggaagagaatcggtggaggtggt |
300 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
49707505 |
gattttgggatgttgatctcagatctcagttgggttctgtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtggaggtggt |
49707406 |
T |
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| Q |
301 |
gatggcgtcagatctgggatggccggtggtggtgttcg |
338 |
Q |
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| T |
49707405 |
gatggcgtcggatctgggacggccggtggtggtgttcg |
49707368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 45883683 - 45883346
Alignment:
| Q |
13 |
aatattcaatatcaacatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaatttcaaaagaattccaccact |
112 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45883683 |
aataatcaatatcaatatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaattccaaaagaattccaccact |
45883584 |
T |
|
| Q |
113 |
atctatgagagcgctcaactactgtaaatggattggaacaacaaagatttgagatatattgcaataattttaattttgatggatatagtaataaagtagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45883583 |
atctatgagagcgctcaactactgtaaatggattggaacaacaaaaatttgagatatattgcaataattttaattttgatggatatagtaataaagtagt |
45883484 |
T |
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| Q |
213 |
gattttgagatgttgatcttagatctcagttgggttctgtgcgtgagcataaaagaattggtgaa------------ggaagagaatcggtggaggtggt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
45883483 |
gattttgggatgttgatcttagatctcagttgggttatgtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtggaggtggt |
45883384 |
T |
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| Q |
301 |
gatggcgtcagatctgggatggccggtggtggtgttcg |
338 |
Q |
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| T |
45883383 |
gatggcgtcggatctgggacggccggtggtggtgttcg |
45883346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 150 - 338
Target Start/End: Complemental strand, 34548685 - 34548485
Alignment:
| Q |
150 |
acaacaaagatttgagatatattgcaataattttaattttgatggatatagtaataaagtagtgattttgagatgttgatcttagatctcagttgggttc |
249 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
34548685 |
acaacaaaaatttgagatatattgcaataattttaattttgatggatatagtaataaagtagtgattttgggatgttgatctcagatctcagttgggttc |
34548586 |
T |
|
| Q |
250 |
tgtgcgtgagcataaaagaattggtgaa------------ggaagagaatcggtggaggtggtgatggcgtcagatctgggatggccggtggtggtgttc |
337 |
Q |
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||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
34548585 |
tgtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtggaggtggtgatggcgtcggatctgggacggccggtggtggtgttc |
34548486 |
T |
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| Q |
338 |
g |
338 |
Q |
| |
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| |
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| T |
34548485 |
g |
34548485 |
T |
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