View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_17 (Length: 311)
Name: NF21179_low_17
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 43439749 - 43440053
Alignment:
| Q |
14 |
tataatttatttttagaaa--ttaagtgtgctgcatttacaaattaatgagcatgttagcttgttctctaatgaactcaatacgatagcttaaacaaagt |
111 |
Q |
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| T |
43439749 |
tataatttatttttagaaaaattaagtgttctgcatttacaaattaatgagcatgttagcttgttctctaatgaactcaatacgagagcttaaacaaagt |
43439848 |
T |
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| Q |
112 |
aacaaaagaagtctcgtacactccgcaatcaagagtttcatt----------tatataaaagtatatattttgtttaaatgcgttgttcgaagtccgtat |
201 |
Q |
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| T |
43439849 |
aaaaaaagaagtctcgtacactccgcaatcaagagtttcatttatataaaagtatataaaagtatatattttgtttaaatgcgttgttcgaattccgtat |
43439948 |
T |
|
| Q |
202 |
tttattcattatttcggttgataaatgtaataatttagtttcattaatttggataaatctgta-ttttatagccaataaactctaacattcactatattc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
43439949 |
tttattcattatttcggttggtaaatgtaataatttagtttcattaatttggataaatttgtatttttatagccaataaactctaacattcactatatta |
43440048 |
T |
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| Q |
301 |
ttgga |
305 |
Q |
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||||| |
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| T |
43440049 |
ttgga |
43440053 |
T |
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