View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_18 (Length: 295)
Name: NF21179_low_18
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 6969943 - 6969681
Alignment:
| Q |
13 |
atgaacttttaattgatgatgagttttgaaatacaaatatacta-acaaagttattgcctagcgtcgagctaagtgactttgtaacctttgcgtagcata |
111 |
Q |
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| T |
6969943 |
atgaacttttaattgatgatgagttttgaaatacaaatatactacacaaagttattgcctagcgtcgagctaagtgactttgtaacctttgcgtagcata |
6969844 |
T |
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| Q |
112 |
gtagaaatgtgatgaaatgtgtatgtgtgaaatggtggacaggctttgaaaggaggagttagagagaaggttgaattggctacaaagtttggagccaaat |
211 |
Q |
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| T |
6969843 |
gtagaaatgtgatgaaatgtgtatgtgtgaaattgtggacaggctttgaaaggaggagttagagagaaggttgaattggctacaaagtttggagccaaat |
6969744 |
T |
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| Q |
212 |
atactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtgaagcta |
274 |
Q |
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| T |
6969743 |
atactgaagggaaatttgagatttgtggtgatccagcttatgtgagagaagcttgtgaagcta |
6969681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 6922526 - 6922429
Alignment:
| Q |
172 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtga |
269 |
Q |
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| T |
6922526 |
agagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtga |
6922429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 6955686 - 6955783
Alignment:
| Q |
172 |
agagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgtga |
269 |
Q |
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| T |
6955686 |
agagagaaggttgaattggctactaagtttggagtcagagctggtgatggaaaatttgagatctgtggtgatccaggttatgtgagagaagcttgtga |
6955783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 6918351 - 6918250
Alignment:
| Q |
168 |
agttagagagaaggttgaattggctacaaagtttggagccaaatatactgaagggaaatttgagatctgtggtgatccagcttatgtgagagaagcttgt |
267 |
Q |
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| T |
6918351 |
agttagagagaaagttgaattggctacaaaatttggagtcagagctggtgatggaaaagttgagatctgtggtgatccaggctatgtgagagtagcttgt |
6918252 |
T |
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| Q |
268 |
ga |
269 |
Q |
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|| |
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| T |
6918251 |
ga |
6918250 |
T |
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