View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_2 (Length: 751)
Name: NF21179_low_2
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 17 - 746
Target Start/End: Original strand, 6488437 - 6489164
Alignment:
| Q |
17 |
atttatacatctccttctaattcattctcacttcacaagcatacacatttttgttgtatctcattacattaacaaaagtaactggttttttcattcatca |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
6488437 |
atttatacatctccttctaattcattcttacttcacaagcatacacatttt-gttgtatctcattacattaacaaaagtatctggtttttt-attcatca |
6488534 |
T |
|
| Q |
117 |
tatcaaaacatatatcttcttatttatatcatataaatcatctttgaccggttgatggccaccagagttatcccaccaagaatcctaaggaaactccgtt |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488535 |
tatcaaaacatatatcttcttgtttatatcatataaatcatctttgaccggttgatggccaccagagttatcccaccaagaatcctaaggaaactccgtt |
6488634 |
T |
|
| Q |
217 |
acaacactgccacaaaaccgttccaacctgccctcacctcgcccgctgtcgctcctgcgtctaatattttagaccaaaaactgccatcatcggtaacaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488635 |
acaacactgccacaaaaccgttccaacctgccctcacctcgcccgctgtcgctcctgcgtctaatattttagaccaaaaactgccatcatcggtaacaac |
6488734 |
T |
|
| Q |
317 |
catcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaacttctcaaatcaactgctgtcctccat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488735 |
catcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaacttctcaaatcaactgctgtcctccat |
6488834 |
T |
|
| Q |
417 |
gctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccattaagtaaccttgctatggctacca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488835 |
gctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccattaagtaaccttgctatggctacca |
6488934 |
T |
|
| Q |
517 |
cacgtgccacttttttcgattatttttgtgctggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagccggtttacgtggaatgct |
616 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6488935 |
cacgtgccacttttttcgatcatttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtggaatgct |
6489034 |
T |
|
| Q |
617 |
ggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatct |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6489035 |
ggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatct |
6489134 |
T |
|
| Q |
717 |
tcggtaatctcttctttatttcatctctct |
746 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6489135 |
tcggtaatctcttctttatttcatctctct |
6489164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 538 - 723
Target Start/End: Complemental strand, 6328510 - 6328325
Alignment:
| Q |
538 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
636 |
Q |
| |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6328510 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6328412 |
T |
|
| Q |
637 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
723 |
Q |
| |
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| T |
6328411 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6328325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 538 - 723
Target Start/End: Complemental strand, 6336068 - 6335883
Alignment:
| Q |
538 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
636 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6336068 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6335970 |
T |
|
| Q |
637 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
723 |
Q |
| |
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| ||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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| T |
6335969 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6335883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 538 - 723
Target Start/End: Complemental strand, 6351053 - 6350868
Alignment:
| Q |
538 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
636 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6351053 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6350955 |
T |
|
| Q |
637 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
723 |
Q |
| |
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| ||||| |||| ||| |||||||| ||||| ||||| |||||||| || |||||||| |||| ||| |||||||| ||||| |||| |
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| T |
6350954 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6350868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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