View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21179_low_20 (Length: 251)

Name: NF21179_low_20
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21179_low_20
NF21179_low_20
[»] chr5 (1 HSPs)
chr5 (58-245)||(9421681-9421867)
[»] chr2 (4 HSPs)
chr2 (56-245)||(27498455-27498643)
chr2 (58-218)||(29434458-29434616)
chr2 (57-218)||(29446184-29446343)
chr2 (100-196)||(27196673-27196768)
[»] chr3 (3 HSPs)
chr3 (58-245)||(53188964-53189149)
chr3 (57-245)||(6731064-6731251)
chr3 (58-245)||(6765993-6766179)
[»] chr1 (2 HSPs)
chr1 (58-245)||(17761080-17761264)
chr1 (100-245)||(45533320-45533464)
[»] chr7 (1 HSPs)
chr7 (100-245)||(11756516-11756660)
[»] chr6 (2 HSPs)
chr6 (100-219)||(15394865-15394982)
chr6 (1-57)||(4347807-4347863)
[»] chr4 (1 HSPs)
chr4 (101-216)||(22754873-22754989)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 9421867 - 9421681
Alignment:
Q  58 tgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaaca 157  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9421867 tgatgacactaggtcatgcattacttttggcttagtttttttatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaa-gaaca 9421769  T
Q  158 attttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9421768 attttgatacttgaagaatgcagaaaatcgtgctccgatttctggcatcgtagcccgatttttggtcaagtttggaagcctttgctac 9421681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 27498455 - 27498643
Alignment:
Q  56 cttgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaa 155  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  27498455 cttgatgacactaggtcatgcattacttttggctta-attttttatgtaattctagatgagttcaggtgtttttgcataagtttgaagctacagaaagaa 27498553  T
Q  156 caattttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||| ||||||||    
T  27498554 caattttgatgcttgaagaatgcaggaaatcgtgctccgatttctgccatcgtagcccgatttgtggtcaagtttggaagcttttgctac 27498643  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 29434616 - 29434458
Alignment:
Q  58 tgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtt-tttgcataagtttgaagctacaaaaagaac 156  Q
    |||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||   |     
T  29434616 tgatgacactaggtcatgcattacttttggctcagttttt--atgtaattctagttgagttcaggtgttgtttgcacaagttagaagctacaaaagacag 29434519  T
Q  157 aattttgatacttgaagaatgcaggaaa-tcgtactccgatttctggcatcgtagcccgattt 218  Q
    ||||  ||||||||||| | |||||||| |||| ||||||| |   |||||||||||||||||    
T  29434518 aatt--gatacttgaaggaagcaggaaaatcgtgctccgatattcagcatcgtagcccgattt 29434458  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 29446343 - 29446184
Alignment:
Q  57 ttgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtt-tttgcataagtttgaagctacaaaaagaa 155  Q
    ||||||||| ||||||||||||||||||||||| ||       |||||||| ||||||||||||| |||| |||||||||||| ||||||||||||   |    
T  29446343 ttgatgacattaggtcatgcattacttttggctcagtcttt--atgtaattttagttgagttcagttgttgtttgcataagttagaagctacaaaagaca 29446246  T
Q  156 caattttgatacttgaagaatgcaggaaa-tcgtactccgatttctggcatcgtagcccgattt 218  Q
     ||||  ||||||||||| | |||||||| |||| ||||||| |   |||||||||||||||||    
T  29446245 gaatt--gatacttgaaggaagcaggaaaatcgtgctccgatattcagcatcgtagcccgattt 29446184  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 27196768 - 27196673
Alignment:
Q  100 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaacaattttgatacttgaagaatgcaggaaatcgtactccgat 196  Q
    |||||||| |||| ||||||||| ||||| ||||||| ||| |||||||||| || ||  ||||| |||| ||| | ||| ||||||||||||||||    
T  27196768 atgtaattttagtggagttcaggagttttcgcataaggttggagctacaaaa-gagcagatttgacactttaaggaagcaagaaatcgtactccgat 27196673  T

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Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 53188964 - 53189149
Alignment:
Q  58 tgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaaca 157  Q
    |||||||||||| ||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  53188964 tgatgacactagatcatgcattacttttggcttagttttt--atgtaattctagatgagttcaggtgtttttgcataagtttgaagctacagaaagaaca 53189061  T
Q  158 attttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||    
T  53189062 attttgatacttgaaggatgcaggaaatcgtgctccgatttctggcatcgtagtccgatttctggtcaagtttggaatcctttgctac 53189149  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 6731064 - 6731251
Alignment:
Q  57 ttgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaac 156  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  6731064 ttgatgacactaggtcatgcattacttttggcttagtttttt-atgtaattctagatgagttcaggtgtttttgcataagtttgaagccacagaaagaac 6731162  T
Q  157 aattttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||| ||||||| ||||||||    
T  6731163 aattttgatgcttgaagaatgcaggaaatcgtgctccgatttctgccatcgtagcccgatttgtggtcaagtctggaagcttttgctac 6731251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 6766179 - 6765993
Alignment:
Q  58 tgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaaca 157  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  6766179 tgatgacactaggtcatgcattacttttggcttagtttttt-atgtaattctagatgagttcaggtgtttttgcataagtttgaagccacagaaagaaca 6766081  T
Q  158 attttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||| ||||||| ||||||||    
T  6766080 attttgatgcttgaagaatgcaggaaatcgtgctccgatttctgccatcgtagcccgatttgtggtcaagtctggaagcttttgctac 6765993  T

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Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 17761080 - 17761264
Alignment:
Q  58 tgatgacactaggtcatgcattacttttggcttagnnnnnnnatgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaaca 157  Q
    ||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  17761080 tgatgacactaggtcatccattacttttggcttagttttt--atgtaattctagttgagttcaggtgtttttgcataagtttgaagttacaaaa-gaaca 17761176  T
Q  158 attttgatacttgaagaatgcaggaaatcgtactccgatttctggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17761177 attttgatacttgaagaaagcagaaaatcgtgctccaatttctggcatcgtagcccgatttttggtcaagtttggaagcctttgctac 17761264  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 45533464 - 45533320
Alignment:
Q  100 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaacaattttgatacttgaagaatgcaggaaatcgtactccgatttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||||||||| || ||| ||||||    
T  45533464 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctac-aaaagaacaaatttgatacttgaaggaagcaggaaattgtgctctgatttc 45533366  T
Q  200 tggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    | |||| |||| || ||||||||| |||||||||||| ||||||||    
T  45533365 ttgcattgtagtccaatttttggtcaagtttggaagcttttgctac 45533320  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 11756660 - 11756516
Alignment:
Q  100 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaacaattttgatacttgaagaatgcaggaaatcgtactccgatttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||||| | ||| ||||||    
T  11756660 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaa-gaacaaatttgatacttgaaggaagcaggaaatcatgctctgatttc 11756562  T
Q  200 tggcatcgtagcccgatttttggttaagtttggaagcctttgctac 245  Q
    | ||||||||| | |||||||||| |||||||||||| ||||||||    
T  11756561 ttgcatcgtagtctgatttttggtcaagtttggaagcttttgctac 11756516  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 15394982 - 15394865
Alignment:
Q  100 atgtaattctagttgagttcaggtgtttttgcataagtttgaagctacaaaaagaacaattttgatacttgaagaatgcaggaaatcgtactccgatttc 199  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||| |||||||||||||  | |||||||||||| ||| |||  |    
T  15394982 atgtaattctagttgagttcaggtgtttt-gcataagttagaggctacaaaa-gaacaaatttgatacttgaaagaagcaggaaatcgtgctcggatccc 15394885  T
Q  200 tggcatcgtagcccgatttt 219  Q
    | ||||||||||||||||||    
T  15394884 tagcatcgtagcccgatttt 15394865  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4347807 - 4347863
Alignment:
Q  1 atacaaaacagccgccaagcgacccacccacaagacaccacaaagcagaacgcccct 57  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  4347807 atacaaaacagccgccaagcgatccacccacaagacaccacaaagcataacgcccct 4347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 22754873 - 22754989
Alignment:
Q  101 tgtaattcta-gttgagttcaggtgtttttgcataagtttgaagctacaaaaagaacaattttgatacttgaagaatgcaggaaatcgtactccgatttc 199  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||  || || || ||||  ||||||| |   |||||||||||||||||||    
T  22754873 tgtaattctaagttgagttcaggtgtttttgcataagtttgaagctacaaaagaaagaaatt-gataagtgaagaaagtgagaaatcgtactccgatttc 22754971  T
Q  200 t-ggcatcgtagcccgat 216  Q
    |  |||||| ||||||||    
T  22754972 tctgcatcggagcccgat 22754989  T

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