View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21179_low_22 (Length: 237)
Name: NF21179_low_22
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_22 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 22247728 - 22247523
Alignment:
| Q |
18 |
acattatctccgataagctggacattaaaacgtgcagacaacgcatcagctgcagcattgtatgctactgctttccatgctccgtcactctggcgaccca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22247728 |
acattatctccgataagctggacattaaaacgtgcagacaacgcatcagttgcagcattgtatgccactgctttccatgctccgtcactctggcgaccca |
22247629 |
T |
|
| Q |
118 |
aacttctttgatctctaagtgcctcggctaaaacacgctccatttccaaattccatgtgaagtaacctcttacatcctctttcttttccacagtgttgct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22247628 |
aacttctttgatctctaagtgcctcggctaaaacacgctccatttccaaattccatgtgaagtaacctcttacatcctctttcttttccacagtgttgct |
22247529 |
T |
|
| Q |
218 |
ttcatc |
223 |
Q |
| |
|
|||||| |
|
|
| T |
22247528 |
ttcatc |
22247523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 41316207 - 41316023
Alignment:
| Q |
18 |
acattatctccgataagctggacattaaaacgtgcagacaacgcatcagctgcagcattgtatgctactgctttccatgctccgtcactctggcgaccca |
117 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||| ||| |||||| ||||| | ||||||| |||| |
|
|
| T |
41316207 |
acattctctccgataagctgaacattaaaacgtgtagacaacacatcagctgcagctttgtatgcttctgttttccaaattccgttagtctggcggccca |
41316108 |
T |
|
| Q |
118 |
aacttctttgatctctaagtgcctcggctaaaacacgctccatttccaaattccatgtgaagtaacctcttacatcctctttctt |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
41316107 |
tacttctttgatctctaagtgcctcagctaatacacgctccatgtccaaattccacgtgaagtaagctcttgcatcctctttctt |
41316023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 44612122 - 44611920
Alignment:
| Q |
18 |
acattatctccgataagctggacattaaaacgtgcagacaacgcatcagctgcagcattgtatgctactgctttccatgctccgtcactctggcgaccca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44612122 |
acattatctccgataagctggacattaaaacgtgctgacaacacatcagctgcagcgttctatgccactgctttccatgctccgtcactctggcgaccca |
44612023 |
T |
|
| Q |
118 |
aacttctttgatctctaagtgcctcggctaaaacacgctccatttccaaattccatgtgaagtaacctcttacatcctctttcttttccacagtgttgct |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
44612022 |
aacttctttgatctctaagtgcctcagctaaaacacgctccatttccaaattccacgtgaagtaacctcgtacatcctctttcttttccacagtgttact |
44611923 |
T |
|
| Q |
218 |
ttc |
220 |
Q |
| |
|
||| |
|
|
| T |
44611922 |
ttc |
44611920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 9963 - 10158
Alignment:
| Q |
18 |
acattatctccgataagctggacattaaaacgtgcagacaacgcatcagctgcagcattgtatgctactgctttccatgctccgtcactctggcgaccca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
9963 |
acattatctccgataagctggacattaaaacgtgctgacaacacatcagctgcagcgttgtatgccactgctttccatgctccatcactctggcgaccca |
10062 |
T |
|
| Q |
118 |
aacttctttgatctctaagtgcctcggctaaaacacgctccatttccaaattccatgtgaagtaacctcttacatcctctttcttttccacagtgtt |
214 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10063 |
aacttc-ttgatccctaagtgcctcagctaaaacacgctccatttccaaattccacgtgaagtaacctcgtacatcctctttcttttccacagtgtt |
10158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University