View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_23 (Length: 222)
Name: NF21179_low_23
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 32769846 - 32770031
Alignment:
| Q |
20 |
taaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgatcatttgtttcataagatatggccaccttcggat |
119 |
Q |
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| T |
32769846 |
taaatctattgaaggttatggatctaagcttggtaatgatattgataacaagagaggttgggttgatcatttgtttcataagatatggccaccttcggat |
32769945 |
T |
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| Q |
120 |
attaactatcgattttggcctaaaaatcctccttcttacaggttagttatttatgtatgcgtcttattacaagcttctataattct |
205 |
Q |
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| T |
32769946 |
attaactatcgattttggcctaaaaatcctccttcttacaggttacttatttatgcatgcctcttattacaagcttctataattct |
32770031 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 24398879 - 24398972
Alignment:
| Q |
69 |
aagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggt |
162 |
Q |
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|||| ||||||||| |||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || ||| |||| ||||||| |
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| T |
24398879 |
aagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctaacaaccctgcttcgtacaggt |
24398972 |
T |
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