View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21179_low_3 (Length: 708)
Name: NF21179_low_3
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 53 - 703
Target Start/End: Original strand, 15076372 - 15077022
Alignment:
| Q |
53 |
tcacttcctaaagaaaatgcatggatattgtcccaaaatttatattttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaa |
152 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15076372 |
tcacttcctaaagaaaatgggtggggattgtcccaaaatgtatattttcaatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaa |
15076471 |
T |
|
| Q |
153 |
atcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaa |
252 |
Q |
| |
|
| |||| ||||||||| ||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
15076472 |
acaatttccaagccaaacacaatgatattgttgttgctagcttaccaaaatcaggcaccacttggttgagagcatttacatttacaattgttaatcgcaa |
15076571 |
T |
|
| Q |
253 |
tcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccatccattgaacgtaatctttatgctgctgatatcaaagaccga |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076572 |
tcaatactcttttgagaatcatccattacttaaatccattatacatgaactagtgccttccattgaacgtaatctttatgctgctgatatcaaagaccga |
15076671 |
T |
|
| Q |
353 |
attcctctctcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagttt |
452 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15076672 |
attcctctatcaaaaataattgaaccaaggctttttgggactcacattccatttccttcacttgccaagtcaattcaagactccaattgtaagatagttt |
15076771 |
T |
|
| Q |
453 |
atataagtagaaatccatttgatacttttgtgtcatattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagagga |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
15076772 |
atataagtagaaatccatttgatacttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccagttttaagcttagagga |
15076871 |
T |
|
| Q |
553 |
agcttttgaaagtttttgtaacggggtaactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagtt |
652 |
Q |
| |
|
| ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15076872 |
aacttttgaaagtttttgtaatgggattactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgattaggccagacaaagtt |
15076971 |
T |
|
| Q |
653 |
ttatttttgaaatatgaagaacttaaagaagattcaatttttcatctcact |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15076972 |
atatttttgaaatatgaagaacttaaagaagatccaatttttcatgtcact |
15077022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Complemental strand, 15172176 - 15171523
Alignment:
| Q |
1 |
atcaaatgatgaacaagaagcaagccaacaagactgtaagcagttcatcctttcacttcctaaagaaaatgcatggatattgtcccaaaatttatatttt |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15172176 |
atcaaaggatggacaagaagcaagccaacaagacaacaagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatgtatatttt |
15172077 |
T |
|
| Q |
101 |
caatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||| ||||| |||| |
|
|
| T |
15172076 |
caatgtttttggtgtccatcaaatatgatccaacctataatctcttttcaaaacaatttccaagccaaacacaatgata-----------------ccaa |
15171994 |
T |
|
| Q |
201 |
aatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaatcaatactcttttgagaatcatccattacttaaatccattatacatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
15171993 |
aatcaggcacaacttggttgagagcacttacatttacaattgtaaatcgcaatcaatactcttttgagaatcattcattacttaaatccattatacataa |
15171894 |
T |
|
| Q |
301 |
actagtgccatccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggatatttgggactcacatt |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
15171893 |
actagtgccttccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctatcaaaaataattgaaccaaggctttttgggactcacatt |
15171794 |
T |
|
| Q |
401 |
ccattttcttcacttgccaagtcaattcaagagtctaattgtaaga---tagtttatataagtagaaatccatttgatacttttgtgtcatattggattt |
497 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15171793 |
ccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtagtttatataagtagaaatccatttgatacttttgtgtcatattggagtt |
15171694 |
T |
|
| Q |
498 |
tcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagaggaagcttttgaaagtttttgtaacggggtaactccatttggttcatt |
597 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15171693 |
tcgttaataaaataaggtcaaaacatccatctttatcagttttaagcttagaggaaacttttgaaagtttttgtaatggggttactccatttggttcatt |
15171594 |
T |
|
| Q |
598 |
ttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatg |
668 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15171593 |
ttgggagcataatttaggttacttgaaagaaagtatgactaggtcagacaaagttttatttttgaaatatg |
15171523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 15169355 - 15168868
Alignment:
| Q |
1 |
atcaaatgatgaacaagaagcaagccaacaagactgtaagcagttcatcctttcacttcctaaagaaaatgcatggatattgtcccaaaatttatatttt |
100 |
Q |
| |
|
|||||| |||| |||||||| || |||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169355 |
atcaaaggatggacaagaagaaaaccaacaagacaataagcaggtgatcctctcacttcctaaagaaaatgcatggatattgtcccaaaatttatatttt |
15169256 |
T |
|
| Q |
101 |
caatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
15169255 |
caatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgcaagcttaccaa |
15169156 |
T |
|
| Q |
201 |
aatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaatcaatactcttttgagaatcatccattacttaaatccattatacatga |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15169155 |
aatcaggcaccacttggttgagagcacttacatttacaattgtaaatcgcaatcaatactcctttgagaatcatccattacttaaatccattatacataa |
15169056 |
T |
|
| Q |
301 |
actagtgccatccattgaacgtaatctttatgctgctgatatcaaagaccgaattcctctctcaaaaataattgaaccaaggatatttgggactcacatt |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169055 |
actagtgccttccattgaacgtaatctttatgctgctgatatgaaggaccaaattcctatatcaaaaataattgaaccaaggatatttgggactcacatt |
15168956 |
T |
|
| Q |
401 |
ccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat |
488 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15168955 |
ccattttcttcacttgccaagtcgattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat |
15168868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 475 - 703
Target Start/End: Complemental strand, 15165349 - 15165121
Alignment:
| Q |
475 |
tacttttgtgtcatattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagaggaagcttttgaaagtttttgtaac |
574 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
15165349 |
tacttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttacaaattgtaagcttaaaggaaacttttgaaagtttttgtaat |
15165250 |
T |
|
| Q |
575 |
ggggtaactccatttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaac |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15165249 |
ggggtaactccatttggttcattttgggagcatactttaggttacttgaaagaaagtatgactagtccagacaaaattttatttttgaaatatgaagaac |
15165150 |
T |
|
| Q |
675 |
ttaaagaagattcaatttttcatctcact |
703 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
15165149 |
ttaaagaagatccaatttttcatgtcact |
15165121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 97 - 696
Target Start/End: Complemental strand, 4506990 - 4506386
Alignment:
| Q |
97 |
ttttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagttta |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
|
|
| T |
4506990 |
ttttcaaggtttttggtgtccatcaaatttaatccaacctataaactcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagctta |
4506891 |
T |
|
| Q |
197 |
ccaaaatcaggcacaacttggttgagagcacttacatttgcaattgtaaatcgcaatcaatactct---tttgagaatcatccattacttaaatccatta |
293 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| |||||||| ||||| ||||| |||| | |||| || || |||||||||||||||||| || | |
|
|
| T |
4506890 |
ccaaaatccggcacaacttggttgaaagcactcacatttgccattgttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaatt |
4506791 |
T |
|
| Q |
294 |
tacatgaactagtgccatccattgaacgtaatctttatgctg---ctgata-tcaaag--accgaattcctctctcaaaaataattgaaccaaggatatt |
387 |
Q |
| |
|
||||||||||||||| | | ||||| ||| |||||| || ||||| || || | |||| || ||||| || | |||||||||| | || |
|
|
| T |
4506790 |
cacatgaactagtgcctttctttgaatacaatgtttatggtggtagtgatagccagagttttcaaattaacctatcaaacatgaatgaaccaaggct-tt |
4506692 |
T |
|
| Q |
388 |
tgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtca |
487 |
Q |
| |
|
| ||||||| ||||||| | |||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
4506691 |
ttggactcatgttccattcttttcactagccaagtcaattaaagagtccaattgtaaaataatttatatatgtagaaatccttttgacacttttgtgtct |
4506592 |
T |
|
| Q |
488 |
tattggattttcgttaataaaataaggtcaaaatatccatctttacaaattttaagcttagaggaagcttttgaaagtttttgtaacggggtaactccat |
587 |
Q |
| |
|
|||| ||| | ||||||||||||||||| ||| |||||||| || ||||||| |||| ||| ||||||||||| |||| | ||| ||| ||||| |
|
|
| T |
4506591 |
gcttggttttatgctaataaaataaggtcaa---atcaatctttaccaactttaagcatagatgaaatttttgaaagttattgtgatgggataagtccat |
4506495 |
T |
|
| Q |
588 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagattc |
687 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| ||||| ||| |||| || |||||||| |||| |||||||||||||| ||||||| || | |
|
|
| T |
4506494 |
ttggttcattttgggatcataagttgggttacttgaaggaaagcatggctagatcacacaaagttctattcttgaaatatgaagatgttaaagagaatgc |
4506395 |
T |
|
| Q |
688 |
aatttttca |
696 |
Q |
| |
|
||||||||| |
|
|
| T |
4506394 |
aatttttca |
4506386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 372 - 499
Target Start/End: Original strand, 15066747 - 15066874
Alignment:
| Q |
372 |
ttgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatt |
471 |
Q |
| |
|
||||||||||| | | ||| |||||||| |||||| |||| | ||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
15066747 |
ttgaaccaaggctttatggaactcacatgccatttccttcgttgcccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatt |
15066846 |
T |
|
| Q |
472 |
tgatacttttgtgtcatattggattttc |
499 |
Q |
| |
|
|||||| ||||| |||||||||| |||| |
|
|
| T |
15066847 |
tgatacatttgtatcatattggactttc |
15066874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 373 - 499
Target Start/End: Complemental strand, 15214692 - 15214566
Alignment:
| Q |
373 |
tgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccattt |
472 |
Q |
| |
|
|||||||||| | ||||| |||||||| |||||| |||| | |||||||| || ||||||| |||||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
15214692 |
tgaaccaaggctttttggaactcacatgccatttccttcgttgcccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccattt |
15214593 |
T |
|
| Q |
473 |
gatacttttgtgtcatattggattttc |
499 |
Q |
| |
|
||||| ||||| ||||||||||||||| |
|
|
| T |
15214592 |
gatacatttgtatcatattggattttc |
15214566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 15164364 - 15164506
Alignment:
| Q |
97 |
ttttcaatgtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgc---aagt |
193 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||| |||| |||||||| |||||||||| ||||||| || | |||||||||| ||| |
|
|
| T |
15164364 |
ttttcaaggtttttggtgttgatcaaatttaatccaacctataaactctgttcaaaatgattttcaagctaaagacaatgctgttgttgttgccaacagt |
15164463 |
T |
|
| Q |
194 |
ttaccaaaatcaggcacaacttggttgagagcacttacatttg |
236 |
Q |
| |
|
|||||| ||| |||| |||||||||| ||||||||| |||| |
|
|
| T |
15164464 |
ataccaagatctggcatcacttggttgaaagcacttacgtttg |
15164506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 284
Target Start/End: Original strand, 15750923 - 15751076
Alignment:
| Q |
135 |
ctataatctcttttcaaaatcattttcaagcc-aaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| | | |||||| | || ||||| ||||||| ||| || || | |
|
|
| T |
15750923 |
ctataatctcttttcaaaatcattttcaagccaaaagatagtgatgttgttgttgcctctatgccaaaaactggaacaacatggttgaaagccctaacct |
15751022 |
T |
|
| Q |
234 |
ttgcaattgtaaatcgcaatcaatac---tcttttgagaatcatccattactta |
284 |
Q |
| |
|
|||| ||||| ||||| |||| | | ||||| ||||||||||||||||||| |
|
|
| T |
15751023 |
ttgctattgttaatcgtaatcgtttctcttctttagagaatcatccattactta |
15751076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 14999896 - 14999981
Alignment:
| Q |
105 |
gtttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
190 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||| |||||||| |||| |||||||| ||||||| |||||| || |||||||| |
|
|
| T |
14999896 |
gtttttggtgtccaccaatattaatccaacctataaactcttttcgaaataattttcaaaccaaagatagtgatgttattgttgca |
14999981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 15066473 - 15066556
Alignment:
| Q |
107 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
190 |
Q |
| |
|
|||||||||||||||| | | |||||| || | | ||||||||||||| ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
15066473 |
ttttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttcatgccaaagatagtgatattgtagttgca |
15066556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 15214970 - 15214887
Alignment:
| Q |
107 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
190 |
Q |
| |
|
|||||||||||||||| | | || ||| || | | ||||||||||||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
15214970 |
ttttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttcatgctaaagacagtgatattgttgttgca |
15214887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 13033142 - 13033252
Alignment:
| Q |
107 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcag |
206 |
Q |
| |
|
||||||||||||||| || | |||||| || | | | ||||||||||| | ||||| |||||||||| |||||||||||||||| | | |||||||| | |
|
|
| T |
13033142 |
ttttggtgtccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagacaatgatattgttgttgcatctatgccaaaatctg |
13033241 |
T |
|
| Q |
207 |
gcacaacttgg |
217 |
Q |
| |
|
|||| |||||| |
|
|
| T |
13033242 |
gcaccacttgg |
13033252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 494
Target Start/End: Original strand, 13033412 - 13033544
Alignment:
| Q |
362 |
tcaaaaataattgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagta |
461 |
Q |
| |
|
||||| || |||||||||||| | ||||| |||||||||||||| ||| | ||||||| || ||||||| | |||||| || |||||||| ||| |
|
|
| T |
13033412 |
tcaaatatgattgaaccaaggctttttggcactcacattccattcctttcgttgcccaagtcggttaaagagtccagttgtaaaatcatttatatatgta |
13033511 |
T |
|
| Q |
462 |
gaaatccatttgatacttttgtgtcatattgga |
494 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||| |
|
|
| T |
13033512 |
gaaacccatttgatacatttgtatcatattgga |
13033544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 15052271 - 15052354
Alignment:
| Q |
107 |
ttttggtgtccatcaaatttgatccaacctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgca |
190 |
Q |
| |
|
|||||||||||||| | || |||||| ||| ||||||||||||||| ||||||| || ||||||||||||||| ||| |||| |
|
|
| T |
15052271 |
ttttggtgtccatctacatttatccaatctacgatctcttttcaaaataattttcatgctaaagacagtgatattattgctgca |
15052354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 682
Target Start/End: Original strand, 15751383 - 15751477
Alignment:
| Q |
588 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaa |
682 |
Q |
| |
|
|||||||||||||||| ||| ||||| || ||||| || || || |||| |||||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
15751383 |
ttggttcattttgggaccatgtgttaggctatttgaacgagagcatagctagaccagacaaggttttattcatgaaatatgaagatcttaaagaa |
15751477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 15000171 - 15000279
Alignment:
| Q |
373 |
tgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccattt |
472 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||| ||| | |||||||||||| | || || ||||||||||| |||||||| |||| |||||| || |
|
|
| T |
15000171 |
tgaaccaagactttttggaactcatattccatttaattccttggccaagtcaattaaggaatccaattgtaagatcatttatatatgtaggaatccactt |
15000270 |
T |
|
| Q |
473 |
gatactttt |
481 |
Q |
| |
|
|| |||||| |
|
|
| T |
15000271 |
gacactttt |
15000279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 1618318 - 1618190
Alignment:
| Q |
371 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
470 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||| ||| |||| || |||||||||||| |||| || |||||||||||| |||| ||| ||||||| |||| |
|
|
| T |
1618318 |
attgaaccaaggctttttggaactcatattccttttacttctctagccaagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccat |
1618219 |
T |
|
| Q |
471 |
ttgatacttttgtgtcatattggattttc |
499 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| |
|
|
| T |
1618218 |
ttgacacttttgtgtcttattggaatttc |
1618190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 1626883 - 1626755
Alignment:
| Q |
371 |
attgaaccaaggatatttgggactcacattccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccat |
470 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||| || |||||||| ||| ||||||| |||||||||||| |||| ||| |||| || |||| |
|
|
| T |
1626883 |
attgaaccaaggatttttggaactcacattcctttccattctctagccaagtctattaaagagtccaattgtaagataatttacatatgtaggaacccat |
1626784 |
T |
|
| Q |
471 |
ttgatacttttgtgtcatattggattttc |
499 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| |
|
|
| T |
1626783 |
ttgacacttttgtgtcttattggaatttc |
1626755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 1618563 - 1618409
Alignment:
| Q |
135 |
ctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatt |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |||||| ||||| |||| | | ||||||||||| ||||| ||||||| ||| || || || |
|
|
| T |
1618563 |
ctataatctcttttcaaaatgattttcaagctaaagatagtgatgttgttattgcctctatgccaaaatcaggaacaacatggttgaaagccctaacctt |
1618464 |
T |
|
| Q |
235 |
tgcaattgtaaatcgcaatcaatactctt---ttgagaatcatccattacttaaa |
286 |
Q |
| |
|
||||||| | |||||| |||| | |||| | ||||||||||||||||||||| |
|
|
| T |
1618463 |
tgcaattattaatcgccatcatttttcttccctagagaatcatccattacttaaa |
1618409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 1627128 - 1627008
Alignment:
| Q |
135 |
ctataatctcttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggttgagagcacttacatt |
234 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || |||||| | |||||||| | | | ||||||||||| ||||| ||||||| ||| || || || |
|
|
| T |
1627128 |
ctataatctcttttcaaaaccactttcaagctaaggatagtgatgtggttgttgccactgttccaaaatcaggaacaacatggttgaaagccctaacctt |
1627029 |
T |
|
| Q |
235 |
tgcaattgtaaatcgcaatca |
255 |
Q |
| |
|
||| ||| | |||||| |||| |
|
|
| T |
1627028 |
tgccattattaatcgccatca |
1627008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 685
Target Start/End: Complemental strand, 1626669 - 1626572
Alignment:
| Q |
588 |
ttggttcattttgggagcataatttaggttacttgaaagaaagtatgactaggccagacaaagttttatttttgaaatatgaagaacttaaagaagat |
685 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||| || || | |||| ||| |||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1626669 |
ttggtccattttgggaccatatgttgggttacttgaaggagagcaaagctagaccaaacaagattttattcttgaaatatgaagatcttaaagaagat |
1626572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 3653267 - 3653192
Alignment:
| Q |
144 |
cttttcaaaatcattttcaagccaaagacagtgatattgttgttgcaagtttaccaaaatcaggcacaacttggtt |
219 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| |||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3653267 |
ctttccaaaagcatttccaagctaaagaaagtgatgtttttgttgcaaccgtaccaaaatcaggcacaacttggtt |
3653192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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