View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_4 (Length: 601)
Name: NF21179_low_4
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 21 - 585
Target Start/End: Complemental strand, 7368643 - 7368077
Alignment:
| Q |
21 |
acgggcaaatttttattgatgaaacatattgtattttataacggctgcattactaatttaataacatttatatgagaacggccaagtctacaacaacaac |
120 |
Q |
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| T |
7368643 |
acgggcaaattttt-ttgatgaaacatactgtattttataacggctgcattactaatttaataacatttatatgagaaaggccaagtctacaacaacaac |
7368545 |
T |
|
| Q |
121 |
aataaagtcttatctcattaagtgggatca----tgtggatcaaactacgccataatatttatggtaaataatatttcaaatcagttcattaatctctag |
216 |
Q |
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|||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7368544 |
aataaagtcttatctcattaggtgggatcaactatgtgaatcaaactacgtcataatatttatggtaaataatatttcgaatcagttcattaatctctag |
7368445 |
T |
|
| Q |
217 |
atgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacagcnnnnnnnnnnnnnnnnntttactaatggaagtaacctggaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7368444 |
atgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacag-aaaaaataaacaaaaaatttactaatggaagtaacctggaa |
7368346 |
T |
|
| Q |
317 |
taagagaaacgaaatgtacattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatat |
416 |
Q |
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| T |
7368345 |
taagagaaacgaaatgtgcattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatat |
7368246 |
T |
|
| Q |
417 |
cgaacttatatgataaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgaacagcctataactaa |
516 |
Q |
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| T |
7368245 |
cgaacttatatgacaaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgagcaacctataactaa |
7368146 |
T |
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| Q |
517 |
cttattgagagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
585 |
Q |
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| T |
7368145 |
cttattgagagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
7368077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 574
Target Start/End: Complemental strand, 7377196 - 7377088
Alignment:
| Q |
465 |
aaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaat |
564 |
Q |
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||||||| |||||||||| |||||||||||||||| ||| || ||| ||| ||||||||| |||| |||||||||||| |||| ||||| ||||||| |
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| T |
7377196 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-attaaaaacagagaaaat |
7377098 |
T |
|
| Q |
565 |
aggaagaaac |
574 |
Q |
| |
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|||||||||| |
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| T |
7377097 |
aggaagaaac |
7377088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 37430417 - 37430484
Alignment:
| Q |
110 |
acaacaacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataat |
173 |
Q |
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| T |
37430417 |
acaacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat |
37430484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 26490596 - 26490530
Alignment:
| Q |
114 |
caacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataatatt |
176 |
Q |
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|||||||||| ||||||||||| | ||||||||||| || ||||||||| |||||||||||||| |
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| T |
26490596 |
caacaacaatcaagtcttatcttactaagtgggatcgactatatggatcaaattacgccataatatt |
26490530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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