View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_5 (Length: 595)
Name: NF21179_low_5
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Complemental strand, 31064679 - 31064102
Alignment:
| Q |
17 |
gtatcttgtttcacatctctacatctttgttgttcaacacataacagatgatcttaatttatat--tccaaaagcaacagattaatattgtaattcattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31064679 |
gtatcttgtttcacatctctacatctttgttgttcaacacataacagatgatcttaatttatatattccaaaagcaacagattaatattgtaattcattt |
31064580 |
T |
|
| Q |
115 |
gagaaattaattgatatcaaaatagacaaaaacaacaggctttctttgagttggcaagatgctttcttgacttaatgattgttatccaaatactatattt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31064579 |
gagaaattaattgatatcaaaatagacaaaaacaacaggctttgtttgagttggcaagatgctttcttgacttaatcattgttatccaaatactatattt |
31064480 |
T |
|
| Q |
215 |
tattttatcacaataca----cgtggtaataattaagtcaagtacagttcacgagtcaaagaatttcaattatttttattaaaataaatgataacattga |
310 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31064479 |
tattttatcacaatacatacacgtggtaataattaagtcaagtacagttcacgagtcaaagaatttcaattatttttattaaaatagatgataacattga |
31064380 |
T |
|
| Q |
311 |
cagattcaatattataatctccatgtgaaagatctgtttcttttttattaatgatttaattaaacttagatgacttaattattcaaaatatgtattaccc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31064379 |
cagattcaatattataatctccatgtgaaagatctgtttcttttttattaatgatttaattaaacttagatgacttaattattcaaaatatgtattaccc |
31064280 |
T |
|
| Q |
411 |
tactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaat |
510 |
Q |
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| T |
31064279 |
tactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatgtctgtcaaat |
31064180 |
T |
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| Q |
511 |
tagtagactcaaaggttctaagaaatttccatgtaacagg-ttccctttcaacctacttccctttttatgatattctt |
587 |
Q |
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|| | ||||| ||||||||||||| |||| ||||||||| ||| |||||||||| |||||||||||||||| ||||| |
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| T |
31064179 |
taacaaactcagaggttctaagaaagttccttgtaacaggtttctctttcaacctgcttccctttttatgattttctt |
31064102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 330 - 577
Target Start/End: Complemental strand, 31111159 - 31110910
Alignment:
| Q |
330 |
tccatgtgaaagatctgtttctttttt-attaatgatttaattaaacttagatgacttaattattcaaaatatgt-attaccctactgtttggattaggt |
427 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||||| |||| |
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| T |
31111159 |
tccatgtgaatgatctgtttctttttttattaatgatttaattaaacctagatgacttaattattcaaaatatattattatcctattgtttggatcaggt |
31111060 |
T |
|
| Q |
428 |
gtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattagtagactcaaaggtt |
527 |
Q |
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| T |
31111059 |
gtttggcccgaatctaagagttttagcgacagaggaattggcccaattccagcgaaatggcgtgggggaaacatctgtcaacttgacaaactcaatacat |
31110960 |
T |
|
| Q |
528 |
ctaagaaatttccatgtaacaggttccctttcaacctacttcccttttta |
577 |
Q |
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|||| ||| ||||||| ||||||||| |||||||||| |||||||||||| |
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| T |
31110959 |
ctaaaaaagttccatgcaacaggttctctttcaacctgcttcccttttta |
31110910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 387 - 552
Target Start/End: Complemental strand, 31051888 - 31051722
Alignment:
| Q |
387 |
aattattcaaaatatgta-ttaccctactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaat |
485 |
Q |
| |
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||||||||||||||| || ||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||||| |
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| T |
31051888 |
aattattcaaaatatataattatcctattgtttggattaggtgtttggcccgaatcggcgagttttaacgacagaggaataggtccaattccagcaaaat |
31051789 |
T |
|
| Q |
486 |
ggcgtgggggtaatatctgtcaaattagtagactcaaaggttctaagaaatttccatgtaacaggtt |
552 |
Q |
| |
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| T |
31051788 |
ggcgtgggggaaacatctgtcaaattaacaaactaagaggttcaaagaaagttccatgtaacaggtt |
31051722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 414 - 562
Target Start/End: Complemental strand, 31147332 - 31147184
Alignment:
| Q |
414 |
tgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattag |
513 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||| |||||||||||| || ||||||||| || ||||||||||||||| || |||||| || |
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| T |
31147332 |
tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga |
31147233 |
T |
|
| Q |
514 |
tagactcaaaggttctaagaaatttccatgtaacaggttccctttcaac |
562 |
Q |
| |
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| |||||| |||||||||| ||||||||||||||||| |||||||| |
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| T |
31147232 |
caaactcaatacttctaagaaagttccatgtaacaggttctctttcaac |
31147184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 562
Target Start/End: Complemental strand, 31165157 - 31165009
Alignment:
| Q |
414 |
tgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattag |
513 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||| |||||||||||| || ||||||||| || ||||||||||||||| || |||||| || |
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| T |
31165157 |
tgtttgtattaggtgtttggccggaatcggagagttttcacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga |
31165058 |
T |
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| Q |
514 |
tagactcaaaggttctaagaaatttccatgtaacaggttccctttcaac |
562 |
Q |
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| T |
31165057 |
caaactcaatacttctaagaaagttccatgtaacaggttctctttcaac |
31165009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 31111427 - 31111382
Alignment:
| Q |
138 |
agacaaaaacaacaggctttctttgagttggcaagatgctttcttg |
183 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31111427 |
agacaaaaactacaggctttctttgagttggcaagatgctttcttg |
31111382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 31111218 - 31111180
Alignment:
| Q |
301 |
ataacattgacagattcaatattataatctccatgtgaa |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31111218 |
ataacattgacagattcaatattataatctccatgtgaa |
31111180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 31051996 - 31051966
Alignment:
| Q |
300 |
gataacattgacagattcaatattataatct |
330 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31051996 |
gataacattgacagattcaatattataatct |
31051966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 31052230 - 31052184
Alignment:
| Q |
138 |
agacaaaaacaacaggctttctttgagttggcaagatgctttcttga |
184 |
Q |
| |
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|||||||||| ||| ||||||||| ||| |||||||||||||||||| |
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| T |
31052230 |
agacaaaaaccacatgctttctttaagtgggcaagatgctttcttga |
31052184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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