View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_7 (Length: 513)
Name: NF21179_low_7
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 12833480 - 12832998
Alignment:
| Q |
20 |
gatgtgagttttatatccaaaatgattcaaatgagtttttgaatataattgccaacacaatgttcttgatttatggatttggtgcgattttatatgaaag |
119 |
Q |
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| T |
12833480 |
gatgtgagttttatatccaaaatgactcaaatgagtttttgaatataattgccaacacaatgttcttgatttatggatttggtgcgattttatatgaaag |
12833381 |
T |
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| Q |
120 |
tgaaccatcaaccattttcactcatannnnnnnncaacgaccatatgcatgaagagacaccgattgtgtcggtggtaatggtatgaaaattcactcctct |
219 |
Q |
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| T |
12833380 |
tgaaccatcaaccattttcactcatattttttttcaacgactatatgcatgaagagacaccgattgtgtcggtggtaatggtacgaaaattcactcctct |
12833281 |
T |
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| Q |
220 |
cgtttttattgttgtcgtcttcgtctggttctaattatttgtatcagtagcatacagttgaattatagaaaatagataaagcaaatgaaaaccaatatta |
319 |
Q |
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| T |
12833280 |
cgtttttattgttgtcgtcttcgtctggttctaattatttgtatcagtagcatacagttgaattataaaaaatagataaagcaaatgaaaaccaatatta |
12833181 |
T |
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| Q |
320 |
gctgaacatgattcaaataggttgatgtgtaccaatgatgaacaattcgtgatgtgcgcttagccgatcaagcaagaggaacgattcagtttgggaaaaa |
419 |
Q |
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| T |
12833180 |
gttgaacacgattcaaatagattgatgtgtaccaatgatgaacaattcgtgatgtgcgcttagccgatcaagcaagaggaacgattcagtttgggaaaaa |
12833081 |
T |
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| Q |
420 |
caatttttaaatgtttctatgatttctagttcaccaaacttttcttattagtgaatagtgtctttaaaatcaaatcagttcat |
502 |
Q |
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| T |
12833080 |
caatttttaaatatttctatgatttctagttcaccaaacttttcttattagtgaatagtgtctttaaaatcaaatcagttcat |
12832998 |
T |
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