View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_8 (Length: 502)
Name: NF21179_low_8
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 15807618 - 15807420
Alignment:
| Q |
43 |
cagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagtttt |
142 |
Q |
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| T |
15807618 |
cagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattagtttt |
15807519 |
T |
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| Q |
143 |
attttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcctaacatataacgaacaagaagcaac |
241 |
Q |
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| T |
15807518 |
attttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcctaacatataacgaacaagaagcaac |
15807420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 314 - 502
Target Start/End: Complemental strand, 15807347 - 15807159
Alignment:
| Q |
314 |
ggatagattcaataaagtctataaaagtgtatcaatccggtagtgttttttaatcaactggagacaattcattttctcttcatttttcaagccaaaacaa |
413 |
Q |
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| T |
15807347 |
ggatagattcaataaagtctataaaagtgtatcaatcctgtagtgttttttaatcaactggagacaattcattttctcttcatttttcaagccaaaacaa |
15807248 |
T |
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| Q |
414 |
tagaaaacaatgaatatatctgggggataacataaataaacagattgaaacaacttcttagtgcctcacagagatgaatgaagaaaaat |
502 |
Q |
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| T |
15807247 |
tagaaaacaatgaatatatctgggggataacataaataaacagattgaaacaacttcttagtgcctcacagagatgaatgaagaaaaat |
15807159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 316 - 502
Target Start/End: Original strand, 3386848 - 3387032
Alignment:
| Q |
316 |
atagattcaataaagtctataaaagtgtatcaatccggtagtgttttttaatcaactggagacaattcattttctcttcatttttcaagccaaaacaata |
415 |
Q |
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| T |
3386848 |
atagattcaataaagcctgtaaaagtgtatcaatcctgtagt-ttttttaatcaattggagacagttcactttctcctcatttt-caagtcaaaacaata |
3386945 |
T |
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| Q |
416 |
gaaaacaatgaatatatctgggggataacataaataaacagattgaaacaacttcttagtgcctcacagagatgaatgaagaaaaat |
502 |
Q |
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| T |
3386946 |
gaaaacaatgtatatatctgggggagaacctaaataaacatattgaaacaacttcttagtgtctcacagagatgaatgaagaaaaat |
3387032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 3367749 - 3367655
Alignment:
| Q |
44 |
agagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag |
138 |
Q |
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| T |
3367749 |
agagaattgaagagcttggtgttaaaggtggcttgtgttgccggataatgatttataaggaaagccttctgccgcttgaaagaaaaaacaattag |
3367655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 3367598 - 3367498
Alignment:
| Q |
138 |
gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcctaacatataacgaacaagaag |
237 |
Q |
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||||||||||| ||| | |||||||||||| |||| |||||||||||| ||||||||||||||| |||||| |||||| ||| ||| ||| |||||| |
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| T |
3367598 |
gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatctgcactcctaccatgtaatgaaaaagaag |
3367502 |
T |
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| Q |
238 |
caac |
241 |
Q |
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| T |
3367501 |
caac |
3367498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 45867027 - 45867124
Alignment:
| Q |
41 |
cacagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaagaaaaaacaattag |
138 |
Q |
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| T |
45867027 |
cacagaaaattgaagagcttggtgttaaaggttattcactttgccagataatagtttataaggaaagccttctaccgattgccagaatcaacaattag |
45867124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
| Q |
138 |
gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg |
202 |
Q |
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| T |
53691512 |
gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg |
53691573 |
T |
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