View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21179_low_9 (Length: 476)
Name: NF21179_low_9
Description: NF21179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21179_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 11929029 - 11928568
Alignment:
| Q |
1 |
tctttgatctcatctctgctgcttgctttttggatatcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccaga |
100 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11929029 |
tctttgatctcatctctgctgcaaactttttggacatcaaaagtttgtacgatcttacgtgcaagactgtagcagacatgatgaacgacaagacaccaga |
11928930 |
T |
|
| Q |
101 |
gcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
11928929 |
gcagattcgtgagatgttcaacattgtgaatgattacagtccgcaggaagaggaggcaattcgtagcgaacacccatgggcctatgaataactatatttt |
11928830 |
T |
|
| Q |
201 |
aggttttagggcttcactgttttgaatgattattatatttgaacatttttgaatcttagtcatggatttgacatgtgggtttgatgttttgtatcatttt |
300 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
11928829 |
aggtttttgggcttcaccgttatgaatgattattatatttgaacattttagaatcttagtcaaggatttgacatgtgggtttgatgttttgtatcgtttt |
11928730 |
T |
|
| Q |
301 |
attattgaaatataactgcaatgcagacttataacttcttagtacnnnnnnnnnctctaatggtttatatatgttgtgtcttgtcatgaatcatcatatt |
400 |
Q |
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||||||||| |||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11928729 |
attattgaa--ataacttcaatgcagatttataacttcttagtacttattt----tgaaatggtttatatatgttgtgtcttgtcatgaatcatcatatc |
11928636 |
T |
|
| Q |
401 |
ttttgcaacgcattctaacaactgacattctttttatctcactctttactattagtgtttggtctgtg |
468 |
Q |
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| T |
11928635 |
tgtcacaacacattctatcaaatgacattatttttatctcactctttattattagtgtttggtgtgtg |
11928568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 11932679 - 11932371
Alignment:
| Q |
1 |
tctttgatctcatctctgctgcttgctttttggatatcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccaga |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11932679 |
tctttgatctcatctctgctgctagctttttggatatcaaaagcttgtacgatcttacgtgcaagactgtagcagacatgatgaacggcaagacaccaga |
11932580 |
T |
|
| Q |
101 |
gcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatacttt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11932579 |
gcagattcgtgcgatgttcaacattgtgaatgattacagtccgcaggaagaggaggaaattcgtagcgaacacccatgggcctatgaataagtatatttt |
11932480 |
T |
|
| Q |
201 |
aggttttagggcttcactgttttgaatgattattatatttgaacatttttgaatcttagtcatggatttgacatgtgggtttgatgttttgtatcatttt |
300 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11932479 |
aggttttagggcttcactattttgagtgattattatatttgaacattttagaatcttagtcatggatttgacatgtgggtttgatgttttgtatcgttta |
11932380 |
T |
|
| Q |
301 |
attattgaa |
309 |
Q |
| |
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||||||||| |
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|
| T |
11932379 |
attattgaa |
11932371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 11160828 - 11160947
Alignment:
| Q |
51 |
gatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaag |
150 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || |||| ||| || ||| |||||||| ||| ||||||||| | |||||||||| ||| |||||| |
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| T |
11160828 |
gatcttacatgcaagactgtagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaag |
11160927 |
T |
|
| Q |
151 |
aggaggaaattcgtagcgaa |
170 |
Q |
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|||||||| | ||||||||| |
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| T |
11160928 |
aggaggaagtccgtagcgaa |
11160947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 11182340 - 11182421
Alignment:
| Q |
89 |
taagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
170 |
Q |
| |
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|||||| |||||| ||| ||||||| |||||||||| ||||||||||||||| |||||||| || |||||||||||||| |
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| T |
11182340 |
taagacgccagaggcgatccgtgagaagttcaacattaagaatgattacagtcccgaggaagagcagaaaattcgtagcgaa |
11182421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 11174890 - 11174971
Alignment:
| Q |
89 |
taagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
170 |
Q |
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| T |
11174890 |
taagacgccagaggcgatccgtgagacattcaacattaagaatgattacagtcctgaggaagagcagaaaattcgtagcgaa |
11174971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 11179154 - 11179074
Alignment:
| Q |
90 |
aagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgtagcgaa |
170 |
Q |
| |
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||||| |||||| ||||||| |||| ||||||||| ||||||||||| ||| |||||||||||||| ||||| ||||| |
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| T |
11179154 |
aagacaccagaggagattcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaa |
11179074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 6948056 - 6947962
Alignment:
| Q |
70 |
tagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaagaggaggaaattcgt |
164 |
Q |
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||||||||||||| || | ||||| || ||| ||||| || |||| |||||||||||||||| |||| |||| ||||||| |||||| ||||| |
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| T |
6948056 |
tagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgcttaccgtcccaaggaagatgaggaagttcgt |
6947962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 24817380 - 24817472
Alignment:
| Q |
44 |
cttgtacgatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgatta |
136 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||| |||||||| |||| | |||||| ||||||| |||| |||||||||||||||||||| |
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| T |
24817380 |
cttgtatgatcttacatgtaagaccatagcagatatgatgaagaataagccaccagaggagattcgcgagactttcaacattgtgaatgatta |
24817472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 8992539 - 8992669
Alignment:
| Q |
51 |
gatcttacgtgcaagactgtagcagacatgatgaacggtaagactccagagcagattcgtgagatgttcaacattgtgaatgattacagtccacaggaag |
150 |
Q |
| |
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|||||||| ||| ||||||| ||||||||||| || || ||||| || ||| ||||||| ||| || |||||| |||||||| | ||| |||||| |
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| T |
8992539 |
gatcttacatgccagactgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacctttaacattaagaatgatttctcaccagaggaag |
8992638 |
T |
|
| Q |
151 |
aggaggaaattcgtagcgaacacccatgggc |
181 |
Q |
| |
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|||||||| ||||||| ||| ||| |||||| |
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| T |
8992639 |
aggaggaagttcgtagggaaaaccaatgggc |
8992669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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