View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2117_high_13 (Length: 369)
Name: NF2117_high_13
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 49425646 - 49425308
Alignment:
| Q |
13 |
aaaatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatccatgttctttgtagttcta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
49425646 |
aaaatattatacttaaaactcatcaacctctttttgcttgtttatgacttggactctcaaatgacttcaataagccagatcgatgttttttgtagttcta |
49425547 |
T |
|
| Q |
113 |
tgctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49425546 |
tgctaacttatgttttcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagattaaacaaatattttatttctcaaaggaatct |
49425447 |
T |
|
| Q |
213 |
gtatttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatgnnnnnnnnccggaagatttggtttattaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49425446 |
gtatttgtctttattttgattgtactaatgttttgattgctccattacaaaaggacttatagactaaatg-tttttttccggaagatttggtttattaag |
49425348 |
T |
|
| Q |
313 |
tatgtaagtaagtaccactaggacggggagtgattaagaa |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425347 |
tatgtaagtaagtaccactaggacggggagtgattaagaa |
49425308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 49444878 - 49444806
Alignment:
| Q |
150 |
tttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatctgtatttgtct |
222 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||| || |||| ||||||| |||| ||||||||| |
|
|
| T |
49444878 |
tttctctttgacacagaagtatggacaaagcctaaacaaatagttgatttttcaaaggtatctttatttgtct |
49444806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 49423341 - 49423259
Alignment:
| Q |
128 |
tcatctttgtcatatgttgtcttttctctttaacacagaagcatggacaaagactaaacaaatattttatttctcaaaggaatc |
211 |
Q |
| |
|
||||||||||||| || | |||||||| ||| |||||||| ||||||||| | ||||||||||||| |||||| ||||||||| |
|
|
| T |
49423341 |
tcatctttgtcatgtgctatcttttctttttggcacagaagaatggacaaa-attaaacaaatatttgatttctaaaaggaatc |
49423259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University