View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_high_14 (Length: 353)
Name: NF2117_high_14
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 29585284 - 29585584
Alignment:
| Q |
17 |
aagaagggtgagagtgaagtgaaggggaaagtgagtaaacaaccgttcgtcggaaacaagaagaaatggcggtgccattagaagaaatagttgaagttgg |
116 |
Q |
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| T |
29585284 |
aagaagggtgagagtgaagtgaaggggaaagtgagtaagcaaccgttcgtcggaaacaagaagaagtggcggtgccattagaagaaatagttgaagttgg |
29585383 |
T |
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| Q |
117 |
aggagtggaatcaaccattgagatttgagagtgatgttgcactttcttcaaaaacgcaagtttgcgtagttttctcctgacttttttgacttatgtatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29585384 |
aggagtggaatcaaccattgagatttgagagtgatgttgcactttcttcaaaaacgcaagtttgcgtagttttctcctgacttttttgact----tatgt |
29585479 |
T |
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| Q |
217 |
atgtaggtggtggagttgaaaagtaaaaatcctcttttttacacaattatagctactttatttttctaaattcatttaacactt-atatattttgatggg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29585480 |
atgtaggtggtggagttgaaaagtaaaaatcctcttttttacacaattatagctactttatttttctaaattcatttaacacttgatatattttgatggg |
29585579 |
T |
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| Q |
316 |
tttgt |
320 |
Q |
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||||| |
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| T |
29585580 |
tttgt |
29585584 |
T |
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