View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_high_25 (Length: 253)
Name: NF2117_high_25
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 10292028 - 10292249
Alignment:
| Q |
20 |
gatggaagcatcatctctcatacaatactctcannnnnnnnnnnaacaaggtttagagcaaaaacatctgcgacggaagccatgacaatgtcctccggtg |
119 |
Q |
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| T |
10292028 |
gatggaagcatcatctctcatacaatactctcatttttctt---aacaaggtttagagcaaaaacatctgcgacggaagccatgacaatgtcctccagtg |
10292124 |
T |
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| Q |
120 |
aaaccctctgttttgcacacgttagcacaattgtgtttaatccaacatactcctttgaagctatgactttgagaatcacaagtccttgccaacggctctt |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10292125 |
aaaccctctgttttgcacacattagcacaattgtgtttaatccaacatactcctttgaagctatgactttgagaatcacaagtccttgcctccggctctt |
10292224 |
T |
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| Q |
220 |
ccacgtgagttggctgcatctctgc |
244 |
Q |
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| T |
10292225 |
ccacgtgagttggctgcatctctgc |
10292249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 10330186 - 10330028
Alignment:
| Q |
64 |
aacaaggtttagagcaaaaacatctgcgacggaagccatgacaatgtcctccggtgaaaccctctgttttgcacacgttagcacaattgtgtttaatcca |
163 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |||| || ||| ||||||||||||||||||||||| |
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| T |
10330186 |
aacaaggtttagagcaaaa-catctgcgacggaagccatgacaatgtcctccagtaaaaccctatgttaagcccacattagcacaattgtgtttaatcca |
10330088 |
T |
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| Q |
164 |
acatactcctttgaagctatgactttgagaatcacaagtccttgccaacggctcttccac |
223 |
Q |
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| T |
10330087 |
acatactcctttgaagctatgactttgagaatcacaagtccttgcctctggctcttccac |
10330028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 32138672 - 32138801
Alignment:
| Q |
64 |
aacaaggtttagagcaaaaacatctgcgacggaagccatgacaatgtcctccggtgaaaccctctgttttgcacacgttagcacaattgtgtttaatcca |
163 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||| |||| | ||||||||||||||| |||||| |||||||||| || | | | | |
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| T |
32138672 |
aacaaggtttagagcaaaaacatctctgacggaagccacgacaacgtccatctgtgaaaccctctgttaagcacacagtagcacaattttgatcacttaa |
32138771 |
T |
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| Q |
164 |
acatactcctttgaagctatgactttgaga |
193 |
Q |
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| T |
32138772 |
acatagtcctttaaaactgtgactttgaga |
32138801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 29804366 - 29804454
Alignment:
| Q |
64 |
aacaaggtttagagcaaaaacatctgcgacggaagccatgacaatgtcctccggtgaaaccctctgttttgcacacgttagcacaattg |
152 |
Q |
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|||||||||||| |||||||||||| |||||||||| | || |||||||| | ||||||||| |||| |||||| |||||||||| |
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| T |
29804366 |
aacaaggtttagtgcaaaaacatctctgacggaagcctttgcagtgtcctccagggaaaccctcagtttggcacacagaagcacaattg |
29804454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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