View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_high_31 (Length: 210)

Name: NF2117_high_31
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_high_31
NF2117_high_31
[»] chr1 (5 HSPs)
chr1 (2-210)||(9163342-9163550)
chr1 (2-210)||(9166589-9166794)
chr1 (16-67)||(27684647-27684699)
chr1 (15-67)||(19866547-19866600)
chr1 (15-59)||(3797927-3797971)
[»] chr4 (4 HSPs)
chr4 (15-66)||(23226676-23226728)
chr4 (7-69)||(23234424-23234487)
chr4 (14-67)||(33076601-33076654)
chr4 (2-42)||(50229837-50229877)
[»] chr3 (3 HSPs)
chr3 (15-67)||(31680804-31680856)
chr3 (15-67)||(31902176-31902228)
chr3 (15-67)||(31917838-31917890)
[»] chr8 (2 HSPs)
chr8 (14-58)||(44254291-44254336)
chr8 (14-50)||(18030726-18030762)
[»] chr7 (5 HSPs)
chr7 (15-71)||(3948126-3948183)
chr7 (15-50)||(1513559-1513594)
chr7 (15-58)||(18660700-18660744)
chr7 (17-68)||(32309117-32309169)
chr7 (17-56)||(32962880-32962920)
[»] chr2 (2 HSPs)
chr2 (15-67)||(34107346-34107399)
chr2 (15-67)||(35352374-35352427)
[»] chr6 (5 HSPs)
chr6 (17-67)||(16119352-16119404)
chr6 (15-67)||(30668154-30668207)
chr6 (28-73)||(34675770-34675815)
chr6 (15-59)||(12311381-12311424)
chr6 (15-67)||(32394097-32394149)
[»] scaffold0102 (1 HSPs)
scaffold0102 (12-67)||(31230-31283)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 9163342 - 9163550
Alignment:
Q  2 cctcagacaacatacttattcaccttaaaaatgtgaattttagccactatactacttg-ccaaaaaatatataacttgaatatgaagacagtttcagcaa 100  Q
    |||| |||| || ||||||||| |||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  9163342 cctcggacatcacacttattcatcttaaaaatgtgaattctagccactagactacctgaccaaaaaatatataacttgaatatgaagaccgtttcagcaa 9163441  T
Q  101 tcaaattgtagataaaagaagttagannnnnnnnnnnnnaaataaatgccatccaaaataatatattaaatatctcttgcattcctatggatatatatca 200  Q
    ||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163442 tcaaattgtagataaaagaagttagattttttttttttt-aataaatgccatccaaaataatatattaaatatctcttgcattcctatggatatatatca 9163540  T
Q  201 cttttcaatt 210  Q
    ||||||||||    
T  9163541 cttttcaatt 9163550  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 9166589 - 9166794
Alignment:
Q  2 cctcagacaacatacttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaatatataacttgaatatgaagacagtttcagcaat 101  Q
    |||| |||| || ||| |||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9166589 cctcggacaccacactaattcaccttaaaaatgtgaattctaac-actataatacttgccaaaaaatatataacttgaatatgaagaccgtttcagcaat 9166687  T
Q  102 caaattgtagataaaagaagttagannnnnnnnnnnnnaaataaatgccatccaaaataatatattaaatatctcttgcattcctatggatatatatcac 201  Q
    |||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  9166688 caaattgtagataaaagaagttagatttttctttttg--aataaatgccatccaaaataatatattaaatatctcttgcattcctatgaatatatatcat 9166785  T
Q  202 ttttcaatt 210  Q
    |||||||||    
T  9166786 ttttcaatt 9166794  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 27684647 - 27684699
Alignment:
Q  16 cttattcacctt-aaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||| |||||||    
T  27684647 cttattcaccttgaaaaaagtgaattttagccactaaactacttgacaaaaaa 27684699  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 19866547 - 19866600
Alignment:
Q  15 acttattcacctt-aaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||    
T  19866547 acttattcaccttaaaaaaggtgaattctagccactaaactacttgacaaaaaa 19866600  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 3797927 - 3797971
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttg 59  Q
    |||||||||||||||||| ||||||| |||||| || ||||||||    
T  3797927 acttattcaccttaaaaaggtgaattatagccattaaactacttg 3797971  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 23226728 - 23226676
Alignment:
Q  15 acttattcaccttaaaaa-tgtgaattttagccactatactacttgccaaaaa 66  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  23226728 acttattcaccttaaaaaatgtgaattatagccactatactacttgacaaaaa 23226676  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 23234424 - 23234487
Alignment:
Q  7 gacaacatacttattcacctt-aaaaatgtgaattttagccactatactacttgccaaaaaata 69  Q
    |||| |||||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||||    
T  23234424 gacaccatacttattcaccttgaaaaaagtgaattttagtcactaaactacatggcaaaaaata 23234487  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 33076601 - 33076654
Alignment:
Q  14 tacttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||||||  |||||| |||||||||| |||| || |||||||    
T  33076601 tacttattcaccttaaaaagatgaattatagccactatgctacctgacaaaaaa 33076654  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 50229837 - 50229877
Alignment:
Q  2 cctcagacaacatacttattcaccttaaaaatgtgaatttt 42  Q
    ||||||||| |||||||||||||||||||||| | ||||||    
T  50229837 cctcagacaccatacttattcaccttaaaaatattaatttt 50229877  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 31680804 - 31680856
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| |||||||    
T  31680804 acttattcaccttaaaaaggtgaattttagccactagactatttgacaaaaaa 31680856  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 31902228 - 31902176
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||||| || |||||||||||||| |||| ||| |||||||    
T  31902228 acttattcaccttaaaaaggtaaattttagccactagactatttgacaaaaaa 31902176  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 31917890 - 31917838
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||||| || ||||||||||||||  ||| ||| |||||||    
T  31917890 acttattcaccttaaaaaggtaaattttagccactaggctatttgacaaaaaa 31917838  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 44254336 - 44254291
Alignment:
Q  14 tacttattcacctt-aaaaatgtgaattttagccactatactactt 58  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||    
T  44254336 tacttattcaccttgaaaaatgtgaattttagccactatgctactt 44254291  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 18030726 - 18030762
Alignment:
Q  14 tacttattcaccttaaaaatgtgaattttagccacta 50  Q
    ||||||||||||||||||||||||||| || ||||||    
T  18030726 tacttattcaccttaaaaatgtgaattctaaccacta 18030762  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 3948126 - 3948183
Alignment:
Q  15 acttattcaccttaaaaatgtgaattt-tagccactatactacttgccaaaaaatata 71  Q
    ||||||||| |||| |||||||||||| ||||||||| |||||||| |||||||||||    
T  3948126 acttattcatcttataaatgtgaatttctagccactaaactacttgacaaaaaatata 3948183  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 1513559 - 1513594
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccacta 50  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1513559 acttattcaccttgaaaatgtgaattttagccacta 1513594  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 18660700 - 18660744
Alignment:
Q  15 acttattcaccttaaaaat-gtgaattttagccactatactactt 58  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||    
T  18660700 acttattcaccttaaaaatggtgaattttaaccactaaactactt 18660744  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 32309169 - 32309117
Alignment:
Q  17 ttattcaccttaaaaa-tgtgaattttagccactatactacttgccaaaaaat 68  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||  |||||||    
T  32309169 ttattcaccttaaaaaatgtgaattctagccactagactacttgaaaaaaaat 32309117  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 32962920 - 32962880
Alignment:
Q  17 ttattcacctt-aaaaatgtgaattttagccactatactac 56  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  32962920 ttattcaccttgaaaaatgtgaattttagccactaaactac 32962880  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 34107346 - 34107399
Alignment:
Q  15 acttattcacctt-aaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||    
T  34107346 acttattcaccttgaaaaatgtgaattctagccactagactacttgacaaaaaa 34107399  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 35352427 - 35352374
Alignment:
Q  15 acttattcacctt-aaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    ||||||||||||| ||||||||||||| ||| ||||| |||||||| |||||||    
T  35352427 acttattcaccttgaaaaatgtgaattctagtcactagactacttgacaaaaaa 35352374  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 16119352 - 16119404
Alignment:
Q  17 ttattcaccttaaaa--atgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||  ||||||||| ||||||||| |||||||| |||||||    
T  16119352 ttattcaccttaaaaaaatgtgaattctagccactagactacttgacaaaaaa 16119404  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 30668207 - 30668154
Alignment:
Q  15 acttattcaccttaaaaa-tgtgaattttagccactatactacttgccaaaaaa 67  Q
    |||||||||||||||||| |||||||| ||| ||||| |||||||| |||||||    
T  30668207 acttattcaccttaaaaaatgtgaattatagtcactagactacttgtcaaaaaa 30668154  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 34675815 - 34675770
Alignment:
Q  28 aaaaatgtgaattttagccactatactacttgccaaaaaatatata 73  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||    
T  34675815 aaaaatgtgaattctagccactacactacttgacaaaatatatata 34675770  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12311424 - 12311381
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttg 59  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  12311424 acttattcaccttaaaa-tgtgaattctagccactaaactacttg 12311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 32394097 - 32394149
Alignment:
Q  15 acttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    ||||||||||||||||||  | |||| ||||||||| |||||||| |||||||    
T  32394097 acttattcaccttaaaaaaattaattctagccactagactacttgacaaaaaa 32394149  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 31230 - 31283
Alignment:
Q  12 catacttattcaccttaaaaatgtgaattttagccactatactacttgccaaaaaa 67  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||||| || |||||||    
T  31230 catacttattcactttaaaa--gtgaattttagccactagactacctgacaaaaaa 31283  T

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