View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_high_5 (Length: 612)
Name: NF2117_high_5
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 17 - 600
Target Start/End: Complemental strand, 32702161 - 32701573
Alignment:
| Q |
17 |
ataacaatagtggaagattgggaaatccagtaaagttttctccaccatttgccacagacagttcaaacacagaaaatacttggatgatattaagttttga |
116 |
Q |
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| T |
32702161 |
ataacaatagtggaagattgggaaatccagtaaagttttctccaccatttgccacagacagttcaaacacagaaaatacttggatggtattaagtttcga |
32702062 |
T |
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| Q |
117 |
tgacatcgatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaagatcagaggaccacagtctct |
216 |
Q |
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| T |
32702061 |
tgacatcgatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaagatcagaggaccacagtctct |
32701962 |
T |
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| Q |
217 |
actaatcaaatctattattacattagtatttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaataaaataaaaattatacttat |
316 |
Q |
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| T |
32701961 |
actaatcaaatctattattacattagtgtttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaataaaataaaaattatacttat |
32701862 |
T |
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| Q |
317 |
aaattcccaaaacaactggttacaactagag--------atgcagttcaatttcagctgtcatgtcctagagtagagtacattactacaaagcaggcgtg |
408 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
32701861 |
aaattcccaaaacaactggttacaactagagatgaagaaatgcagttcaatttcagctgtca--------actagagtacattgctacaaagcaggcgtg |
32701770 |
T |
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| Q |
409 |
aagtgtgatagttgatttctaaatctttctttctggcactgccaataattgagctggttt-----atttcatttcatttactcatttagcaattttatgc |
503 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32701769 |
atgtgtgatagttgatttctaaatctttctttctggcactgccaataattgagctggtttatttcatttcatttcatttactcatttagcaattttatgc |
32701670 |
T |
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| Q |
504 |
tgcaaattttattgacttgggtataagcttaccccaacaagcaacaaccatataacagcacatgttatttgttctcaacacacaatcacaacacagg |
600 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32701669 |
tgcaaattttattgagctgtgtataagcttaccccaacaagcaacaaccatacaacagcacatgttatttgttcccaacacacaatcacaacacagg |
32701573 |
T |
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