View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_high_7 (Length: 590)

Name: NF2117_high_7
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_high_7
NF2117_high_7
[»] chr6 (12 HSPs)
chr6 (13-346)||(4803412-4803759)
chr6 (378-590)||(4803760-4803972)
chr6 (320-450)||(4806193-4806321)
chr6 (320-426)||(4824146-4824251)
chr6 (146-198)||(4798625-4798677)
chr6 (523-575)||(10779297-10779349)
chr6 (463-521)||(4806919-4806977)
chr6 (115-197)||(4825401-4825482)
chr6 (320-397)||(4819127-4819204)
chr6 (158-198)||(4817795-4817835)
chr6 (523-588)||(4798003-4798068)
chr6 (146-198)||(4804812-4804864)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 4803412 - 4803759
Alignment:
Q  13 aaaattagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaattattagtaatattatgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4803412 aaaattagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaagtattagtaat-ttatgt 4803510  T
Q  113 gttttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgta----- 207  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4803511 gttctgtgaaacatatttatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaaca 4803610  T
Q  208 ----------gaacacagaagtgagatgttattagaaaaatgcaatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacg 297  Q
              ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803611 caatgttatcgaacacagaagtgagatgttattagaaaaatgctatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacg 4803710  T
Q  298 tttgcttagagttgcaaaagggatattcagcaacttctggtaaaccatt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803711 tttgcttagagttgcaaaagggatattcagcaacttctggtaaaccatt 4803759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 378 - 590
Target Start/End: Original strand, 4803760 - 4803972
Alignment:
Q  378 tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtatcaaaatttgaatcgctttttcgcctt 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4803760 tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtatcaaaatttgaatcgctttttcgcctt 4803859  T
Q  478 ccgatgcttctctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtc 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  4803860 ccgatgcttctctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagcttcatagacatgtttttcaacatcagtgttgaagac 4803959  T
Q  578 aaggtacttgcat 590  Q
    |||||||||||||    
T  4803960 aaggtacttgcat 4803972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 320 - 450
Target Start/End: Original strand, 4806193 - 4806321
Alignment:
Q  320 atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt 419  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| | ||  |||||||||| |||||||||  |||||||    
T  4806193 atattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatcttttcggaagaaagaaccacc-aaaaccgacgtttgcatt 4806290  T
Q  420 caagaacttcggtctgattcttgtgtcggta 450  Q
    |||||||||| ||||||||||||||||||||    
T  4806291 caagaacttcagtctgattcttgtgtcggta 4806321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 426
Target Start/End: Original strand, 4824146 - 4824251
Alignment:
Q  320 atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt 419  Q
    |||||||| ||||||||||||| ||| ||||  ||||||| ||||||||||||||||||| ||||| || ||| ||||||| |||| ||| |||||||||    
T  4824146 atattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccacc-aaaaacgatacttgcatt 4824244  T
Q  420 caagaac 426  Q
    | |||||    
T  4824245 ctagaac 4824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4798625 - 4798677
Alignment:
Q  146 cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa 198  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  4798625 cccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaa 4798677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 10779297 - 10779349
Alignment:
Q  523 atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaag 575  Q
    ||||||||||||| | |||||||||||||||||||||||||||| || |||||    
T  10779297 atacaaacacaattttagcttcatagacatgtttttcaacatcagtgctgaag 10779349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 4806919 - 4806977
Alignment:
Q  463 tcgctttttcgccttccgatgcttctctacctccaatgagaactcagtctggattgaaa 521  Q
    |||||||||| |||||||  ||||||||| |||||| ||||||||||||| ||||||||    
T  4806919 tcgctttttcaccttccggggcttctctatctccaacgagaactcagtctagattgaaa 4806977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 4825401 - 4825482
Alignment:
Q  115 tttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataa 197  Q
    ||||||||||||||||| |||||||| | | ||||||| ||| |||| |||||| |||||| ||| || ||||||||||||||    
T  4825401 tttgtgaaacatatgtagagcgataggttgtcccacatcggatgtttcagaagcatagaga-gtagaccaccattataaataa 4825482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 4819127 - 4819204
Alignment:
Q  320 atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaacc 397  Q
    |||||||| ||||||   |||||||||| |||  |||||| |||||||||||| |||||||||||| || ||||||||    
T  4819127 atattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaacc 4819204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 4817795 - 4817835
Alignment:
Q  158 gtttgagaagcttagagatgtaaactaccattataaataaa 198  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  4817795 gtttgagaaacttagagatgtaaactactattataaataaa 4817835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 588
Target Start/End: Complemental strand, 4798068 - 4798003
Alignment:
Q  523 atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgc 588  Q
    ||||||||||  |||||||||||| ||||||||||| ||||||| || |||||  ||||| |||||    
T  4798068 atacaaacactgtgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgc 4798003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4804812 - 4804864
Alignment:
Q  146 cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa 198  Q
    ||||||| ||| ||||||||| |||||||| | |||||| |||||||||||||    
T  4804812 cccacatcggatgtttgagaatcttagagaggcaaactatcattataaataaa 4804864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University