View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_high_9 (Length: 555)
Name: NF2117_high_9
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 9 - 538
Target Start/End: Complemental strand, 38831592 - 38831074
Alignment:
| Q |
9 |
gagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcga |
108 |
Q |
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| T |
38831592 |
gagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaagggaacttattggaaagcatcaatttcga |
38831493 |
T |
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| Q |
109 |
attcgatgatgatttcttcgtatgtttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcagc |
208 |
Q |
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| T |
38831492 |
attcgatgatgatttcttcgtatgcttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcagc |
38831393 |
T |
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| Q |
209 |
ggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaag |
308 |
Q |
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| T |
38831392 |
ggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaag |
38831293 |
T |
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| Q |
309 |
tagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaa |
408 |
Q |
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| T |
38831292 |
tagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaa |
38831193 |
T |
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| Q |
409 |
aggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagttaaggtgagttactatatatataattgctatttaatttggtatatg |
508 |
Q |
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| T |
38831192 |
aggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagtgaaggtgag-----------ataattgctatttaatttggtatatg |
38831104 |
T |
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| Q |
509 |
tttgttaattagttacaaacccttttactt |
538 |
Q |
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| T |
38831103 |
tttgttaattagttacaaacccttttactt |
38831074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 30463872 - 30463923
Alignment:
| Q |
57 |
gtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcga |
108 |
Q |
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| T |
30463872 |
gtgactttggcgacctttccgaaggaaatttattggaaagcatcaacttcga |
30463923 |
T |
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