View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2117_low_11 (Length: 489)
Name: NF2117_low_11
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_11 |
 | |
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| [»] scaffold0077 (2 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
| | |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 60140 - 60549
Alignment:
| Q |
3 |
tgagtttatatttgtttaatgttaaatcttattcaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaa |
102 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
60140 |
tgagtttataattgtttactgttaaatcttattgaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaa |
60239 |
T |
|
| Q |
103 |
attcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaattgtttgaaatg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
60240 |
attcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtattttcttgtagtagccaaaattgtttgaaatg |
60339 |
T |
|
| Q |
203 |
gtcctccacgtgatatccacaaacatatttcttcttctctcaataatgtttcaaccattcaagtgttcaatggatttggtt-cctttaatttcgtttgat |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
60340 |
gtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattgttcaatggatttggttaactttaatttcgtttgat |
60439 |
T |
|
| Q |
302 |
ttttgttttggaataaatgatagnnnnnnnngttgaggaagaaacaaaggatggttgtaagttgcaattgtttcaaggtttaaactacctgcagttttct |
401 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
60440 |
ttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgtaagttgcaattgtttcaaggtttaaactacctgcagttttct |
60539 |
T |
|
| Q |
402 |
ttttcttgca |
411 |
Q |
| |
|
|||||||||| |
|
|
| T |
60540 |
ttttcttgca |
60549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 50387 - 50801
Alignment:
| Q |
3 |
tgagtttatatttgtttaatgttaaatcttattcaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaa |
102 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50387 |
tgagtttatagttgtttactgttaaatcttattgaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaa |
50486 |
T |
|
| Q |
103 |
attcaccaacttgtatgttatccaaa-----gaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaattgtttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
50487 |
attcaccaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacctgtattttcttgtagtagccaaaattgtttg |
50586 |
T |
|
| Q |
198 |
aaatggtcctccacgtgatatccacaaacatatttcttcttctctcaataatgtttcaaccattcaagtgttcaatggatttggtt-cctttaatttcgt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
50587 |
aaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattgttcaatggatttggttaactttaatttcgt |
50686 |
T |
|
| Q |
297 |
ttgatttttgttttggaataaatgatagnnnnnnnngttgaggaagaaacaaaggatggttgtaagttgcaattgtttcaaggtttaaactacctgcagt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50687 |
ttgatttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgtaagttgcaattgtttcaaggtttaaactacctgcagt |
50786 |
T |
|
| Q |
397 |
tttctttttcttgca |
411 |
Q |
| |
|
||||||||||||||| |
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|
| T |
50787 |
tttctttttcttgca |
50801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 41930058 - 41929792
Alignment:
| Q |
3 |
tgagtttatatttgtttaatgttaaatcttattcaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaa |
102 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
41930058 |
tgagtttatatttgtttactgtgaaatcttattcaagtcatagtatatacaaacttaacatgatcatttataaagtttatgacacagaaaggtaaacaaa |
41929959 |
T |
|
| Q |
103 |
attcaccaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaattgtttgaaatg |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
41929958 |
att----aacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagtatgtagaacctgtatcttcttgtagtagccaaaattgtttgaactg |
41929863 |
T |
|
| Q |
203 |
gtcctccacgtgatatccacaaacatatttcttcttctctcaataatgtttcaaccattcaagtgttcaat |
273 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41929862 |
gtcctccacgtgatatccacaaacgtatttcttcttctctcaacaatgtttcaaccattcaattgttcaat |
41929792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 324
Target Start/End: Complemental strand, 41929790 - 41929761
Alignment:
| Q |
295 |
gtttgatttttgttttggaataaatgatag |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41929790 |
gtttgatttttgttttggaataaatgatag |
41929761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 266 - 465
Target Start/End: Original strand, 22377364 - 22377567
Alignment:
| Q |
266 |
tgttcaatggatttggttcctttaatttcgtttgatttttgttttggaataaatgatagnnnnnnnn---gttgaggaagaaacaaaggatggttgtaag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
22377364 |
tgttcaatggatttggttcctttaatttcgtttgatttttgttttagaataaatgatagttttgttttttgttgaggaaggaacaaaggatggttgtaag |
22377463 |
T |
|
| Q |
363 |
ttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgcagttaacaaatttttcccttgcaccagttacgtgaagttacttatgaagtt |
461 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
22377464 |
ttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgcggttaacaaattttttccttacaccagttacatgaagttacttctgaagtt |
22377563 |
T |
|
| Q |
462 |
attc |
465 |
Q |
| |
|
|||| |
|
|
| T |
22377564 |
attc |
22377567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 266 - 465
Target Start/End: Complemental strand, 9368481 - 9368274
Alignment:
| Q |
266 |
tgttcaatggatttggttcctttaatttcgtttgatttttgttttggaataaatgatagnnnnnnnn-------gttgaggaagaaacaaaggatggttg |
358 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
9368481 |
tgttcaatgggtttggttcttttaatttcgtttgatttttgttttggaataaatgatagtttttttttttttttgttgaggaaggaataaaggatggttg |
9368382 |
T |
|
| Q |
359 |
taagttgcaattgtttcaaggtttaaac-tacctgcagttttctttttcttgcagttaacaaatttttcccttgcaccagttacgtgaagttacttatga |
457 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9368381 |
taagttgcaattgtttcaaggtttaaacgtacctgcagttttctttttcttgcggtaaacaaatttttcccttgcaccagttacgtgaagttacttctga |
9368282 |
T |
|
| Q |
458 |
agttattc |
465 |
Q |
| |
|
|||||||| |
|
|
| T |
9368281 |
agttattc |
9368274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 209715 - 209854
Alignment:
| Q |
107 |
accaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagcc-aaaattgtttgaaatggtc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
209715 |
accaacttgtatgttatccaaagaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaaattgtttgaaatggtc |
209814 |
T |
|
| Q |
206 |
ctccacgtgatatccacaaacatatttcttcttctctcaa |
245 |
Q |
| |
|
||||| ||||||| |||||| || ||||||||||||||| |
|
|
| T |
209815 |
ttccacatgatatcgacaaacgtaattcttcttctctcaa |
209854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 17862 - 17776
Alignment:
| Q |
29 |
tcttattcaagtcatagtatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttg |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17862 |
tcttattcaagtcatattatataccaacttaacatgatcatttataaagtttatgacacacaaaggtacacaaaattcaccaacttg |
17776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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