View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_12 (Length: 464)
Name: NF2117_low_12
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 11296037 - 11295612
Alignment:
| Q |
2 |
agtcgagagagatgaagagataccgataacggcagagagaataacttgtgagatttcgatggtatgaaattaaggttggatttgtcaattaataggtttt |
101 |
Q |
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| T |
11296037 |
agtcaagagagcagaagagataccgataacggcagagagaataacttgtgagatttcgatggtatgaaattaaggttggatttgtcaattaataggtttt |
11295938 |
T |
|
| Q |
102 |
ggataaataagtcaaagacttggt--------------ccagttttccttcnnnnnnn-gtcttggtccaatttttgttttgactgaagtaaacttaact |
186 |
Q |
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| T |
11295937 |
ggataaataagtcaaagacttggttgccaagtcttggtccaattttccttaaaaaaaaagtcttggtccaatttttgttttgactaaagtaaacttaact |
11295838 |
T |
|
| Q |
187 |
tatttcatttatcaaagacttggtcgccatgtctttatccagtttataagacacggtgtagttttagctaacaaatgagcaacattgttgacttgccgtc |
286 |
Q |
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| T |
11295837 |
tatttcatttatcaaagacttggtcgtcatgtctttgtccagtttataagacacggtgtaattttagctaacaaatgagcaacattgttggcttgccgtc |
11295738 |
T |
|
| Q |
287 |
aaataaacttaacttaaagtgaatgctacttgacaaaaggttagagag----agagtttcccaacttaaggattttcttttcttgaacgacgatcaacca |
382 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11295737 |
aaataaagttaacttaaagtgaatgctacttgacaaaaggttagagagagagagagtttcccaacttaaggattttcttatcttgaacgacgatcaacca |
11295638 |
T |
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| Q |
383 |
ccacattttaaacatatgatatgtat |
408 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11295637 |
ccacattttaaacatatgatatgtat |
11295612 |
T |
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