View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2117_low_13 (Length: 437)
Name: NF2117_low_13
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 12930676 - 12931046
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12930676 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
12930775 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930776 |
cattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtgg |
12930873 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnngctaccgctgtgctgc |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
12930874 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgc |
12930973 |
T |
|
| Q |
309 |
aagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930974 |
aagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
12931046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 12935422 - 12935786
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12935422 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
12935521 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935522 |
cattagagtaaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtgg |
12935619 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnngctaccgctgtgctgc |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
12935620 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgc |
12935719 |
T |
|
| Q |
309 |
aagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935720 |
aagatccagtttcttttgaattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
163 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
262 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| ||| ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
263 |
tccacgttaaatattggtgtt |
283 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
173 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
272 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || | |||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
273 |
atattggtgttca |
285 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
322 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
367 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 14173937 - 14174308
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14173937 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
14174036 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174037 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtgg |
14174134 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
14174135 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcactaccgctgcgctg |
14174234 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174235 |
caagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
14174308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 28611933 - 28611562
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28611933 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
28611834 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611833 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtgg |
28611736 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28611735 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttcattttttttatcgctaccgctgcgctg |
28611636 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611635 |
caagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
28611562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 14178691 - 14179057
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14178691 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
14178790 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178791 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtgg |
14178888 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
14178889 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttattgctaccgctgcgctg |
14178988 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
376 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178989 |
caagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 28607171 - 28606805
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28607171 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
28607072 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607071 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtgg |
28606974 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
28606973 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttaattttttttatcgctaccgctgcgctg |
28606874 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
376 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606873 |
caagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
28606805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 44161586 - 44161949
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44161586 |
gtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
44161685 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44161686 |
cattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatattctttaatatagtgg |
44161781 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
44161782 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctg |
44161881 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161882 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 11104477 - 11104829
Alignment:
| Q |
20 |
aaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
11104477 |
aaaaatagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaa |
11104576 |
T |
|
| Q |
120 |
tagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
219 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
11104577 |
taggagtgggtctcacgggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttt |
11104673 |
T |
|
| Q |
220 |
tcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnngctaccgctgtgctgcaagatccaat |
318 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| ||||| | |||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
11104674 |
tcggagtttgtcccgtggt-ttaccctcgatattagaggattttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaat |
11104772 |
T |
|
| Q |
319 |
ctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104773 |
ctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 74 - 376
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
| Q |
74 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga |
48826903 |
T |
|
| Q |
174 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa |
273 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
48826902 |
gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa |
48826804 |
T |
|
| Q |
274 |
tattggtgttc--annnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc |
371 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
48826803 |
tattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccc |
48826706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
| Q |
179 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
278 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
279 |
gt |
280 |
Q |
| |
|
|| |
|
|
| T |
48708156 |
gt |
48708155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
105 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
204 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
205 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
264 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 34907139 - 34907503
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34907139 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatag |
34907238 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907239 |
cattagaataaaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtgg |
34907336 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnngctaccgctgtgctgc |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
34907337 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgc |
34907436 |
T |
|
| Q |
309 |
aagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907437 |
aagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 37040791 - 37040426
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37040791 |
gtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatag |
37040692 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37040691 |
cattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgag--agagtggagaaaatattgtaatattctttaatatagtgg |
37040594 |
T |
|
| Q |
212 |
aatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
37040593 |
aatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaccgctgcgctg |
37040494 |
T |
|
| Q |
308 |
caagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040493 |
caagatccagtcttttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 15290243 - 15290600
Alignment:
| Q |
23 |
aatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatag |
122 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
15290243 |
aatagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaatag |
15290339 |
T |
|
| Q |
123 |
aagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcg |
222 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| || ||| | |
|
|
| T |
15290340 |
gagtgggtctcacgg-aaacactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttg |
15290436 |
T |
|
| Q |
223 |
gagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca----nnnnnnngctaccgctgtgctgcaagatccaat |
318 |
Q |
| |
|
|||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
15290437 |
gagtttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaat |
15290536 |
T |
|
| Q |
319 |
ctc-ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15290537 |
ctctttttggattttgaaattttaatttacaattgcgttaagctcgtcgagcccaacaagtggt |
15290600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 73 - 375
Target Start/End: Original strand, 12099060 - 12099361
Alignment:
| Q |
73 |
gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagag |
172 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
12099060 |
gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag |
12099159 |
T |
|
| Q |
173 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||||||||| ||||| || |
|
|
| T |
12099160 |
--agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaa |
12099257 |
T |
|
| Q |
273 |
atattggtgttca-nnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc |
371 |
Q |
| |
|
|||||| | |||| |||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12099258 |
atattgcttttcatttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagccc |
12099357 |
T |
|
| Q |
372 |
aaca |
375 |
Q |
| |
|
|||| |
|
|
| T |
12099358 |
aaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 12082021 - 12082227
Alignment:
| Q |
18 |
agaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| | |
|
|
| T |
12082021 |
agaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttg |
12082119 |
T |
|
| Q |
118 |
aatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatt |
217 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
12082120 |
aataggagcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatatt |
12082216 |
T |
|
| Q |
218 |
tttcggagttt |
228 |
Q |
| |
|
||| ||||||| |
|
|
| T |
12082217 |
ttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
139 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
| Q |
293 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
||||||| || ||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 2757273 - 2757209
Alignment:
| Q |
315 |
caatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
379 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||||||||| || | ||||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaagtg |
2757209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 375
Target Start/End: Complemental strand, 29107224 - 29106878
Alignment:
| Q |
28 |
agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
29107224 |
agtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagt |
29107125 |
T |
|
| Q |
127 |
aggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
226 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107124 |
aggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagt |
29107028 |
T |
|
| Q |
227 |
ttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnngctaccgctgtgctgcaagatccaatctctttt |
325 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
29107027 |
ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatctttttt |
29106928 |
T |
|
| Q |
326 |
ggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
29106927 |
ggattttggaattttaatttacacttgcattaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 42911346 - 42910992
Alignment:
| Q |
20 |
aaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
42911346 |
aaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaa |
42911247 |
T |
|
| Q |
120 |
tagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
219 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
42911246 |
tagaagtaggtctcaagggaaacactatattgtatcttttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttt |
42911150 |
T |
|
| Q |
220 |
tcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca-nnnnnnngctaccgctgtgctgcaagatccaat |
318 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||| ||| |
|
|
| T |
42911149 |
tcggagtttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaat |
42911050 |
T |
|
| Q |
319 |
ctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
376 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42911049 |
ctcttttggattttaaaattttaatttccacttgcgttaagctcgtcgagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 381
Target Start/End: Complemental strand, 38994779 - 38994693
Alignment:
| Q |
295 |
taccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaagtggt |
38994693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
194 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc |
284 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 38997193 - 38997135
Alignment:
| Q |
320 |
tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagt |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| | |||| |||||||||| |
|
|
| T |
38997193 |
tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaagt |
38997135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 8539183 - 8539549
Alignment:
| Q |
12 |
gtgagaagaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatag |
111 |
Q |
| |
|
|||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
8539183 |
gtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatag |
8539282 |
T |
|
| Q |
112 |
cattagaatagaagtaggtctcacgggaaacactata---ttgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatag |
208 |
Q |
| |
|
|| | |||||| ||| |||||||||| |||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8539283 |
caatcgaataggagtgggtctcacgg-aaacactataatattgtatctcttgtgtgtgtaagag--agtggagataatattgtaatattcttaaatatag |
8539379 |
T |
|
| Q |
209 |
tggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnngctaccgctgtgct |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| ||| |
|
|
| T |
8539380 |
tggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttcattttttattgttaccgctgcgct |
8539479 |
T |
|
| Q |
307 |
gcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
376 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539480 |
gcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctcgtcgagcccaacaa |
8539549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 51302168 - 51302306
Alignment:
| Q |
19 |
gaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattaga |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| || |
|
|
| T |
51302168 |
gaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcga |
51302267 |
T |
|
| Q |
119 |
atagaagtaggtctcacgggaaacactatattgtatctc |
157 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302268 |
ataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 51302937 - 51303025
Alignment:
| Q |
293 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtggt |
381 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaagtggt |
51303025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
249 |
gtattagagggttttccacgttaaatattggtgttca |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 375
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
194 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc-annnnnnn |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||| |||||||||||| |||||||||| ||||| | |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
293 |
gctaccgctgtgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
375 |
Q |
| |
|
|| || |||||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
151 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
201 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University