View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_14 (Length: 413)
Name: NF2117_low_14
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 42748108 - 42748496
Alignment:
| Q |
1 |
atattaaaagtactcatggcaagtattttaagcaagtgacaactttggtttaacttgaaaatcactctcacaagcctcaaataccgtagcattgatgaca |
100 |
Q |
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| T |
42748108 |
atattaaaagtactcatagcaagtattttaagcaagtgacaactttggtttaacttgaaaatcactctcacaagcctcaaataccgtagcattgatgaca |
42748207 |
T |
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| Q |
101 |
taacatgtgaattttataactagtgggctggtacctttctattgcaagtaactaaggactaagcctcttagaaagctccaactattaaaattgtttaatt |
200 |
Q |
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| T |
42748208 |
taacatgtgaattttataactagtgggctggtacctttctattgcaagtaactaaggactaagcctcttagaaagctccaactattaaaattgtttaatt |
42748307 |
T |
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| Q |
201 |
tgaatgtactatatagaagctccaacaactatgaagattatttatttaatttgaatgtactatatatacttctatatagaagttccaacaactattaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42748308 |
tgaatgtactatatagaagctccaacaactatgaagattatttatttaatttgaatgtactatatatacttctatatagaagttccaacaactattaaga |
42748407 |
T |
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| Q |
301 |
tagtttatttaatttgaaagtactataatactatatagtatctgtaattatattcggcacgaaattgcagcttacatcaatccccattc |
389 |
Q |
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| T |
42748408 |
tagtttatttaatttgaaagtactataatactatatagtatctgtaattatattcggcacgaaattgcagcttacatcaatccccattc |
42748496 |
T |
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