View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_low_19 (Length: 331)

Name: NF2117_low_19
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_low_19
NF2117_low_19
[»] chr2 (8 HSPs)
chr2 (7-304)||(15996820-15997116)
chr2 (254-303)||(21620768-21620817)
chr2 (254-303)||(26051200-26051249)
chr2 (258-301)||(15080088-15080130)
chr2 (257-303)||(11563421-11563467)
chr2 (254-303)||(4860579-4860627)
chr2 (256-301)||(31596951-31596996)
chr2 (254-294)||(32227431-32227471)
[»] chr3 (6 HSPs)
chr3 (254-303)||(50170585-50170634)
chr3 (254-294)||(37662918-37662958)
chr3 (255-291)||(3382572-3382608)
chr3 (260-296)||(50129033-50129069)
chr3 (254-294)||(28451856-28451896)
chr3 (260-296)||(50129171-50129207)
[»] chr1 (10 HSPs)
chr1 (254-303)||(19234792-19234841)
chr1 (255-301)||(25901896-25901942)
chr1 (260-296)||(34967758-34967794)
chr1 (255-303)||(38081700-38081750)
chr1 (254-300)||(30058347-30058393)
chr1 (258-303)||(36567456-36567501)
chr1 (254-294)||(298195-298235)
chr1 (254-294)||(3491551-3491591)
chr1 (254-294)||(14149442-14149482)
chr1 (254-294)||(52413957-52413997)
[»] chr6 (4 HSPs)
chr6 (254-301)||(11753073-11753120)
chr6 (254-292)||(12622500-12622538)
chr6 (254-303)||(5605238-5605287)
chr6 (256-303)||(15528452-15528499)
[»] chr4 (16 HSPs)
chr4 (255-301)||(52355968-52356014)
chr4 (254-303)||(30666828-30666877)
chr4 (255-303)||(22318094-22318142)
chr4 (257-304)||(51164636-51164683)
chr4 (258-303)||(10401598-10401643)
chr4 (255-303)||(46963964-46964012)
chr4 (258-301)||(13435479-13435522)
chr4 (249-300)||(45891757-45891808)
chr4 (258-303)||(5817325-5817370)
chr4 (259-304)||(25064192-25064237)
chr4 (258-303)||(37861163-37861208)
chr4 (254-295)||(54933086-54933127)
chr4 (254-294)||(22409468-22409508)
chr4 (254-294)||(32280428-32280468)
chr4 (247-291)||(46393114-46393158)
chr4 (257-301)||(53209998-53210042)
[»] chr8 (4 HSPs)
chr8 (258-303)||(8059901-8059946)
chr8 (254-301)||(30875630-30875677)
chr8 (257-303)||(8753345-8753391)
chr8 (254-294)||(40819427-40819467)
[»] chr7 (9 HSPs)
chr7 (256-303)||(6271389-6271436)
chr7 (254-301)||(43132016-43132063)
chr7 (265-303)||(31765469-31765507)
chr7 (255-294)||(40720365-40720404)
chr7 (259-297)||(37828459-37828497)
chr7 (260-301)||(5505602-5505643)
chr7 (246-283)||(41888943-41888980)
chr7 (260-296)||(18700065-18700101)
chr7 (261-301)||(30961666-30961706)
[»] chr5 (4 HSPs)
chr5 (255-303)||(11991559-11991607)
chr5 (254-294)||(40113066-40113106)
chr5 (248-301)||(523618-523671)
chr5 (255-303)||(28735399-28735446)
[»] scaffold0024 (1 HSPs)
scaffold0024 (258-300)||(45935-45977)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 15997116 - 15996820
Alignment:
Q  7 tcgaagaatatctaaaacaacgccccaggtactaacattattgcacaaaaccaaggcgcatacatagtaacatataagcaaaagagatataaaagtcaaa 106  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  15997116 tcgaagacaatctaaaacaacgcctcaggtactaacattattgcacaaaaccaaggtgcatacatagtaaaatataagcaaaagagatataaaagtcaaa 15997017  T
Q  107 tattgtttgtctaaaaagttgaatcaagtgcatgtcttttggaattaatcattgaggttacaaatattctaggtatcagaagttataaatatgtcattaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15997016 tattgtttgtctaaaaagttgaatcaagtgcatgtcttttggaattaatcattgaggttacaaatattctaggtatcagaagttataaatatgtcattaa 15996917  T
Q  207 ttccttcgacattacttacttaaaagtactctctcactaataaaatgagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtg 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  15996916 ttccttcgacattacttactt-aaagtactctctcactaataaaatgagggaaatgttaacttgtactcttggggcataagttaagaaaccaaatgtg 15996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 21620817 - 21620768
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  21620817 agggaaatgttaacttgtgcctttgaggcataagttaagaaaccaaatgt 21620768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 26051200 - 26051249
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||| |||||||||||||| |||||| ||||||||||||||| ||||||    
T  26051200 agggagatgttaacttgtgctcttgggacataagttaagaaactaaatgt 26051249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 15080088 - 15080130
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  15080088 aaatgttaacttgtgccctt-gggcataagttaaaaaaccaaat 15080130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 11563421 - 11563467
Alignment:
Q  257 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||| ||||||||||||||||| ||||||||||||| | ||||||    
T  11563421 gaaatgctaacttgtgcccttgggacataagttaagaagctaaatgt 11563467  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 4860627 - 4860579
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||||||  |||||||||||||||  |||||||    
T  4860627 agggaaatgttaacttgtgccctt-aggcataagttaagaagacaaatgt 4860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 31596951 - 31596996
Alignment:
Q  256 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  31596951 ggaaatgctaacttgtgcccttgaggcatatgttaagaaatcaaat 31596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 32227431 - 32227471
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||| ||||||||| ||||||| ||||||||    
T  32227431 agggaaatgttaacatgtgcccttagggcatatgttaagaa 32227471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 50170634 - 50170585
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50170634 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 50170585  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 37662918 - 37662958
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37662918 agggaaatgttaacttgtgcccttggggcataagttaagaa 37662958  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 3382572 - 3382608
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaa 291  Q
    |||||||||||||||||||||||||||||||||||||    
T  3382572 gggaaatgttaacttgtgcccttggggcataagttaa 3382608  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 50129033 - 50129069
Alignment:
Q  260 atgttaacttgtgcccttggggcataagttaagaaac 296  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50129033 atgttaacttgtgcccttggggcataagtttagaaac 50129069  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 28451896 - 28451856
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  28451896 agggaaatgttaacttgtgcccttagggcacatgttaagaa 28451856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 50129207 - 50129171
Alignment:
Q  260 atgttaacttgtgcccttggggcataagttaagaaac 296  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50129207 atgttaacttgtgcccttagggcacaagttaagaaac 50129171  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 19234792 - 19234841
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19234792 agggaaatgttaacttgtgcccttgcggcataagttaagaaaccaaatgt 19234841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 25901942 - 25901896
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  25901942 gggaaatgttaacttgtgcccttgggacataagttaagaaactaaat 25901896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 34967794 - 34967758
Alignment:
Q  260 atgttaacttgtgcccttggggcataagttaagaaac 296  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34967794 atgttaacttgtgcccttggggcacaagttaagaaac 34967758  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 38081750 - 38081700
Alignment:
Q  255 gggaaatgttaacttgtgccctt--ggggcataagttaagaaaccaaatgt 303  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| ||||||    
T  38081750 gggaaatgctaacttgtgcccttcgggggcataagttaagaaactaaatgt 38081700  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 30058347 - 30058393
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaa 300  Q
    |||||||||||||||||||| |||| | ||||||||||| |||||||    
T  30058347 agggaaatgttaacttgtgctcttgagacataagttaaggaaccaaa 30058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 36567501 - 36567456
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||| || ||||| |||||||||||| ||||||    
T  36567501 aaatgttaacttgtgcctttagggcagaagttaagaaactaaatgt 36567456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 298195 - 298235
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  298195 agggaaatgttaacttgtgcccttagggcacatgttaagaa 298235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 3491591 - 3491551
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  3491591 agggaaatgttaacttgtgcccttagggcaaatgttaagaa 3491551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 14149442 - 14149482
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  14149442 agggaaatattaacttgtgcccttagggcataagataagaa 14149482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 52413997 - 52413957
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    ||||||||||||||||||||||||  |||| ||||||||||    
T  52413997 agggaaatgttaacttgtgcccttaaggcacaagttaagaa 52413957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 11753120 - 11753073
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11753120 agggaaatgttaacttgtgcccttgggacataagttaagaaaccaaat 11753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 12622500 - 12622538
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaag 292  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12622500 agggaaatgttaacttgtgcccttgaggcataagttaag 12622538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 5605238 - 5605287
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| |||||||    
T  5605238 agggaaatgataatttgtgcctttggggcataagttaagaaatcaaatgt 5605287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 15528499 - 15528452
Alignment:
Q  256 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||    
T  15528499 ggaaatgttaacttgtgttcttggggcataagttaaaaaactaaatgt 15528452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 52356014 - 52355968
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  52356014 gggaaatgttaacttgtgcccttgaggcataagttaagaaaccaaat 52355968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 30666828 - 30666877
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30666828 agggaaatgttaacttgtgcccttgaggcacaagttaagaaaccaaatgt 30666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 22318094 - 22318142
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  22318094 gggaaatgttaatttgtgctcttggggcataagttaaggaaccaaatgt 22318142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 51164683 - 51164636
Alignment:
Q  257 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtg 304  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||    
T  51164683 gaaatgttaacttgtgcccttgaggcagaagttaagaaactaaatgtg 51164636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 10401643 - 10401598
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||    
T  10401643 aaatgttaatttatgcccttgaggcataagttaagaaaccaaatgt 10401598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 46964012 - 46963964
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  46964012 gggaaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgt 46963964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 13435522 - 13435479
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  13435522 aaatgataactcgtgcccttgggacataagttaagaaaccaaat 13435479  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 45891757 - 45891808
Alignment:
Q  249 aaatgagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaa 300  Q
    |||| |||||||||||||||||||| |||  |||| ||||||||||||||||    
T  45891757 aaataagggaaatgttaacttgtgctcttaaggcacaagttaagaaaccaaa 45891808  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 5817325 - 5817370
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||||||||||  |||||||||| ||| ||||||||    
T  5817325 aaatgttaacttgtgcccttgaagcataagttacgaacccaaatgt 5817370  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 25064237 - 25064192
Alignment:
Q  259 aatgttaacttgtgcccttggggcataagttaagaaaccaaatgtg 304  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||    
T  25064237 aatgttaacttgtgcccttgagacataagttaagaaagtaaatgtg 25064192  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 37861163 - 37861208
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||  |||| ||||| |||||||||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgt 37861208  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 54933086 - 54933127
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaa 295  Q
    ||||||||||||||||||| | |||||| |||||||||||||    
T  54933086 agggaaatgttaacttgtgtcattggggtataagttaagaaa 54933127  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 22409508 - 22409468
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  22409508 agggaaatgttaacttgtgcccttagggcacatgttaagaa 22409468  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 32280468 - 32280428
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    ||||||||||||||||||||||||  | |||||||||||||    
T  32280468 agggaaatgttaacttgtgcccttaagacataagttaagaa 32280428  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 46393114 - 46393158
Alignment:
Q  247 taaaatgagggaaatgttaacttgtgcccttggggcataagttaa 291  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||    
T  46393114 taaaattagggaaatgttaacttgtgtccttaaggcataagttaa 46393158  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 53209998 - 53210042
Alignment:
Q  257 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||    
T  53209998 gaaatgttaacttgtgtccttgaagcataagttaaggaaccaaat 53210042  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 8059901 - 8059946
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8059901 aaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgt 8059946  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 30875630 - 30875677
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  30875630 agggaaatgttaacttgtgtctttgaggcataagttaagaaaccaaat 30875677  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 8753391 - 8753345
Alignment:
Q  257 gaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||    
T  8753391 gaaatgttaacttgtgccctcgaggcataagttaagaaactaaatgt 8753345  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 40819467 - 40819427
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  40819467 agggaaatgttaacttgtatctttggggcataagttaagaa 40819427  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 6271436 - 6271389
Alignment:
Q  256 ggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6271436 ggaaatgttaacttatgcccttggggcataagttaagaaagcaaatgt 6271389  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 43132063 - 43132016
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||    
T  43132063 agggaaatgctaacttgtgcccttggggcataagttaagaaatcaaat 43132016  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 31765507 - 31765469
Alignment:
Q  265 aacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  31765507 aacttgtgcctttggggcataagttaagaaaccaaatgt 31765469  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 40720365 - 40720404
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  40720365 gggaaatgttaacttgtgcgcttggggcataaattaagaa 40720404  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 37828497 - 37828459
Alignment:
Q  259 aatgttaacttgtgcccttggggcataagttaagaaacc 297  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  37828497 aatgctaacttgtgcccttggggcatatgttaagaaacc 37828459  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 5505602 - 5505643
Alignment:
Q  260 atgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||||||||||  ||||||||||||||| |||||    
T  5505602 atgttaacttgtgcccttgaagcataagttaagaaatcaaat 5505643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 41888980 - 41888943
Alignment:
Q  246 ataaaatgagggaaatgttaacttgtgcccttggggca 283  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41888980 ataaaataagggaaatgttaacttgtgcccttagggca 41888943  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 18700101 - 18700065
Alignment:
Q  260 atgttaacttgtgcccttggggcataagttaagaaac 296  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  18700101 atgttaacttgtgccctaggggcacaagttaagaaac 18700065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 30961706 - 30961666
Alignment:
Q  261 tgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  30961706 tgttaacttgtgtccttgaggcataagttaagaaaacaaat 30961666  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 11991607 - 11991559
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  11991607 gggaaatgttaacttgtgtccttggggcataaattaagaagccaaatgt 11991559  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 40113106 - 40113066
Alignment:
Q  254 agggaaatgttaacttgtgcccttggggcataagttaagaa 294  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  40113106 agggaaatgttaacttgtgcccttggagcataagttaagaa 40113066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 523618 - 523671
Alignment:
Q  248 aaaatgagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaat 301  Q
    ||||| ||||||||||||||||||||||||  |||| ||||| |||| ||||||    
T  523618 aaaataagggaaatgttaacttgtgcccttaaggcacaagtttagaagccaaat 523671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 28735446 - 28735399
Alignment:
Q  255 gggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgt 303  Q
    ||||||||||||||||||||||| ||| ||||||||||||  |||||||    
T  28735446 gggaaatgttaacttgtgccctt-gggtataagttaagaagacaaatgt 28735399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 45977 - 45935
Alignment:
Q  258 aaatgttaacttgtgcccttggggcataagttaagaaaccaaa 300  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  45977 aaatgttaacctgtgcccttggggcataagttaaggaaccaaa 45935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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