View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_2 (Length: 810)
Name: NF2117_low_2
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 61 - 794
Target Start/End: Complemental strand, 26832197 - 26831463
Alignment:
| Q |
61 |
gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggactt |
160 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
26832197 |
gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt |
26832098 |
T |
|
| Q |
161 |
ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac |
260 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
26832097 |
ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacac |
26831998 |
T |
|
| Q |
261 |
-ttgaagaagagactaatctcctactaatacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831997 |
attgaagaagagactaatctcctactattacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta |
26831898 |
T |
|
| Q |
360 |
ttagtaatgaacggattaattaatatttgtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag |
459 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831897 |
ttagtaatgaactgattaattaatatttgtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag |
26831798 |
T |
|
| Q |
460 |
gttgttgaattaattaattaacgatgtgtgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaatt |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831797 |
gttgttgaattaattaattaacgatgtgtgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaatt |
26831698 |
T |
|
| Q |
560 |
atcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaatccctaatctaatctcatcgcatggctaaaacag |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26831697 |
atcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaacccctaatctaatctcatcgcatggctaaaacag |
26831598 |
T |
|
| Q |
660 |
tttcatccattttccttctaaattgtgattatagtcatagttatggttacgtacactgcaagctttgatactacaataatacaaacaaatgtggctgata |
759 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26831597 |
tttcatccattttccttctgaattgtgattatagtcatagttatggttacatacgctgcaagctttgatactacgataatacaaacaaatgtggctgata |
26831498 |
T |
|
| Q |
760 |
tgcggccacaattatagctgtgatgtcgttgtaga |
794 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
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| T |
26831497 |
tgcggccacaattatagctgtgatgtcattgtaga |
26831463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 491 - 622
Target Start/End: Complemental strand, 26818016 - 26817885
Alignment:
| Q |
491 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
590 |
Q |
| |
|
||||| ||||||||| |||||||||| | |||||||| ||||| ||||||||| | ||||||||| |||||||||||| || ||||||||||| ||||| |
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| T |
26818016 |
ttttctctttgttttcagtgaatgcgaacgaatgtttgatgacgaggatgcaacaaatgtcactcgattatcattttaaggtagaacaagaagtgggatc |
26817917 |
T |
|
| Q |
591 |
ttcctcttacgccttctttggcttcaacggta |
622 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |
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| T |
26817916 |
ttccgcttacgccttctttggcttcaatggta |
26817885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 497 - 623
Target Start/End: Complemental strand, 26785120 - 26784994
Alignment:
| Q |
497 |
ctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctc |
596 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| || ||||| | |
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| T |
26785120 |
ctttgtttttagtaaatgcgaatgaatgtttgatgacgaggatgcaaaagatgtcacttgattatcattttacggttgaacaagaagtggggtcttctac |
26785021 |
T |
|
| Q |
597 |
ttacgccttctttggcttcaacggtaa |
623 |
Q |
| |
|
||| ||||||||||||||||| ||||| |
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|
| T |
26785020 |
ttatgccttctttggcttcaatggtaa |
26784994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 491 - 623
Target Start/End: Complemental strand, 26791329 - 26791197
Alignment:
| Q |
491 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
590 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| ||||||||| | |||||||| |||| ||||||| || ||||||||||| || || |
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| T |
26791329 |
ttttccctatgtttttagtgaatgcaaatgaatgtttaatgacgaggatgcaacaaatgtcacttgattaccattttaaggtggaacaagaagtagggtc |
26791230 |
T |
|
| Q |
591 |
ttcctcttacgccttctttggcttcaacggtaa |
623 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||| |
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|
| T |
26791229 |
ttccacttatgccttctttggcttcaatggtaa |
26791197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
| Q |
135 |
ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt |
187 |
Q |
| |
|
||||||| |||||||||||||||| || || |||||||||||| ||||||||| |
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| T |
10629409 |
ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt |
10629461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 552
Target Start/End: Original strand, 41546623 - 41546664
Alignment:
| Q |
511 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
552 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
41546623 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
41546664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 502 - 624
Target Start/End: Original strand, 41919467 - 41919589
Alignment:
| Q |
502 |
tttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacg |
601 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||||| || ||||||||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| | |
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| T |
41919467 |
ttttcagtgaattcggatgaatgtatgatgactagaatgcaagagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatg |
41919566 |
T |
|
| Q |
602 |
ccttctttggcttcaacggtaaa |
624 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
41919567 |
ccttctttggcttcaacggtaaa |
41919589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 507 - 623
Target Start/End: Complemental strand, 20237408 - 20237292
Alignment:
| Q |
507 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
606 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||||||||| | |||| ||||| |||||||| |||||||||||||| | || | || ||| |
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| T |
20237408 |
agtgaatgcaaatgaatgtttgttgacaagaatgcaagagatgtctttggattaccatttcacagttgagcaagaagttggatcagctactcatgctttc |
20237309 |
T |
|
| Q |
607 |
tttggcttcaacggtaa |
623 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
20237308 |
tttggcttcaatggtaa |
20237292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
| Q |
138 |
gttgaggttcgaacctcggacttctcacttattcacct |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3218632 |
gttgaggttcgaacctcgaacttctcacttattcacct |
3218669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
| Q |
128 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
176 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
24074542 |
atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt |
24074590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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