View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_20 (Length: 326)
Name: NF2117_low_20
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 42645989 - 42646182
Alignment:
| Q |
9 |
gagatgaagagagtgtagcgattttatgtcagtgaggtgattcagaaaagtactttctcaatgtttgcccattataatatgtttttattaataaaaaatt |
108 |
Q |
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| T |
42645989 |
gagaagaagagagtgtagcgattttatgtcagtgaggtgattcagaaaagtactttctcaatatttgcccattataatatgtttttattaataaaaaatt |
42646088 |
T |
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| Q |
109 |
taaatcacagcaggtgataaacaggcagttgtaggtaaaaatcaaagtttcccatgatgggnnnnnnntgtgctttcccaaattaaatggcacc |
202 |
Q |
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| T |
42646089 |
taaatcacagcaggtgataaacaggcagttgtaggtaaaaatcagagtttcccatgatggaaaaaaagtgtgcttttccaaattaaatgacacc |
42646182 |
T |
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Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 49749867 - 49750059
Alignment:
| Q |
9 |
gagatgaagagagtgtagcgattttatgtcagtgaggtgattcagaaaagtactttctcaatgtttgcccattataatatgtttttattaataaaaaatt |
108 |
Q |
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| T |
49749867 |
gagaagaagagagtgtagcggttttatgtcagggaggtgattcagaaaagtattttctcaatatttgcccattataatat-tttttattaataaaaaatt |
49749965 |
T |
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| Q |
109 |
taaatcacagcaggtgataaacaggcagttgtaggtaaaaatcaaagtttcccatgatgggnnnnnnntgtgctttcccaaattaaatggcacc |
202 |
Q |
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| T |
49749966 |
taaatcacagcaggtgatacacagacagttgtaggtaaaaatcaaagttttccatgatagaaaaaaaatgtgctttcccaaattaaatgacacc |
49750059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 41875358 - 41875310
Alignment:
| Q |
235 |
tctcaatatttcaataaactagtctatgtggttggtcagattgaaaggt |
283 |
Q |
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| T |
41875358 |
tctcaatatttcaataaactagtctatgtggttggtcagattgaaaggt |
41875310 |
T |
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