View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_low_21 (Length: 322)

Name: NF2117_low_21
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_low_21
NF2117_low_21
[»] chr3 (1 HSPs)
chr3 (6-304)||(50345267-50345555)
[»] chr4 (3 HSPs)
chr4 (6-78)||(28880127-28880198)
chr4 (8-78)||(40422946-40423016)
chr4 (7-50)||(4441924-4441967)
[»] chr5 (2 HSPs)
chr5 (8-70)||(6373276-6373338)
chr5 (7-69)||(8944182-8944244)
[»] chr7 (3 HSPs)
chr7 (7-78)||(33871834-33871904)
chr7 (7-78)||(22556578-22556648)
chr7 (7-80)||(31055489-31055562)
[»] chr2 (2 HSPs)
chr2 (7-78)||(15803309-15803379)
chr2 (7-72)||(1270582-1270647)
[»] chr1 (3 HSPs)
chr1 (7-78)||(43530172-43530242)
chr1 (7-71)||(13044468-13044530)
chr1 (10-78)||(50097754-50097821)
[»] chr8 (4 HSPs)
chr8 (7-73)||(27085485-27085551)
chr8 (7-71)||(32158902-32158965)
chr8 (8-71)||(1839701-1839763)
chr8 (8-78)||(10878659-10878728)
[»] scaffold0119 (2 HSPs)
scaffold0119 (7-72)||(30590-30655)
scaffold0119 (7-72)||(37258-37323)
[»] chr6 (1 HSPs)
chr6 (6-78)||(33184302-33184373)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 304
Target Start/End: Complemental strand, 50345555 - 50345267
Alignment:
Q  6 acattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatatcctcaaagctcttgcttcctctctctt 105  Q
    |||||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  50345555 acattaatttatcactctctaaaaataatactcttttaaaaaatataagagatttctcaattttcccctatatcctcaaagctcttccttcttctctctt 50345456  T
Q  106 ctaaacttacaaacaaagcccgaacaaaaccgtaaagaccaa-agagtaaaagacccttgtagaggctgctacagaaaaggaatgaggttttccaactaa 204  Q
    |||||||||||||||||           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50345455 ctaaacttacaaacaaa-----------accataaagaccaacagagtaaaagacccttgtagaggctgctacagaaaaggaatgaggttttcaaactaa 50345367  T
Q  205 ctttatcccatgtagtttcttaaaaataaatcatcccatgatgcgtccctactagatatttaacagttaggttactgactagcggggatatacctaaggg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50345366 ctttatcccatgtagtttcttaaaaataaatcatcccatgatgcgtccctactagatatttaacagttaggttactgactagcggggatatacctaaggg 50345267  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 28880127 - 28880198
Alignment:
Q  6 acattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    |||||||||||| ||| |||||||| |||||||||| |||||||| || |||||||||||||||||| |||||    
T  28880127 acattaatttatcactctctaaaaa-aatactctttcaaaaaatgtaaaagatttctcaattttcccctatat 28880198  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 40423016 - 40422946
Alignment:
Q  8 attaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    |||||||||| ||| |||||||| |||||||||| ||||| ||  | ||||||||||||||||||||||||    
T  40423016 attaatttatcactctctaaaaaaaatactctttcaaaaattgtgaaagatttctcaattttcccatatat 40422946  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 4441967 - 4441924
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatg 50  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  4441967 cattaatttatcactctctaaaaataatactcttttaaaaaatg 4441924  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 6373276 - 6373338
Alignment:
Q  8 attaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttc 70  Q
    |||||||||| ||||||||||||  ||||||||| |||||||| || ||||||||||||||||    
T  6373276 attaatttatcactttctaaaaaacatactctttcaaaaaatgtaaaagatttctcaattttc 6373338  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 8944182 - 8944244
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaatttt 69  Q
    ||||||||||| | | |||||||| | ||||||||||||||||  || |||||||||||||||    
T  8944182 cattaatttatcattctctaaaaaaactactcttttaaaaaatttaaaagatttctcaatttt 8944244  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 33871904 - 33871834
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    ||||||||||||| | |||||||| | ||||||||||||||||  || ||||||||||||||||||| ||||    
T  33871904 cattaatttattattctctaaaaa-actactcttttaaaaaatttaaaagatttctcaattttcccacatat 33871834  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 22556648 - 22556578
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    ||||| ||||| ||| |||||||| |||||||||||||||||||  | ||||||||||||||| || |||||    
T  22556648 cattagtttatcactctctaaaaa-aatactcttttaaaaaatgtgaaagatttctcaatttttccctatat 22556578  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 31055489 - 31055562
Alignment:
Q  7 cattaatttattactttctaaaaataatactctttta-aaaaatgcaagagatttctcaattttcccatatatcc 80  Q
    ||||||||||| ||| |||||||| || ||||||||| |||||||  | |||||||||||||||||| |||||||    
T  31055489 cattaatttatcactctctaaaaa-aacactcttttataaaaatgtgaaagatttctcaattttcccttatatcc 31055562  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 15803309 - 15803379
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    ||||||||||| ||| |||||||| |||||||||| ||||||||  | |||||||||||||||||| |||||    
T  15803309 cattaatttatcactctctaaaaa-aatactctttcaaaaaatgtgaaagatttctcaattttcccctatat 15803379  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 1270647 - 1270582
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttccc 72  Q
    ||||||||||| | | |||||||| | ||||||||||||||||  || ||||||||||||| ||||    
T  1270647 cattaatttatcattctctaaaaaaactactcttttaaaaaatttaaaagatttctcaattctccc 1270582  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 43530242 - 43530172
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||  | |||||||||||||||||| |||||    
T  43530242 cattaatttatcactctctaaaaa-aacactcttttaaaaaatgtgaaagatttctcaattttcccctatat 43530172  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13044530 - 13044468
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcc 71  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||  | |||||||| ||||||||    
T  13044530 cattaatttatcactctctaaaaa--atactcttttaaaaaatgtgaaagatttcttaattttcc 13044468  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 50097754 - 50097821
Alignment:
Q  10 taatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    |||||||| ||| |||||||| |||||||||| ||||||||  | ||||||||||||||| || |||||    
T  50097754 taatttatcactctctaaaaa-aatactctttcaaaaaatgtgaaagatttctcaatttttccttatat 50097821  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 27085485 - 27085551
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttccca 73  Q
    ||||||||||| ||| |||||||| |||||||||| || |||||  | |||||||||||||||||||    
T  27085485 cattaatttatcactctctaaaaaaaatactctttcaacaaatgtgaaagatttctcaattttccca 27085551  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 32158902 - 32158965
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcc 71  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||  | |||||||||||||||||    
T  32158902 cattaatttattactctctaaaaa-aatactctttacaaaaatgtgaaagatttctcaattttcc 32158965  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 1839763 - 1839701
Alignment:
Q  8 attaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcc 71  Q
    |||||||||| ||| |||||||| |||||||||| ||||||||  | |||||||||||||||||    
T  1839763 attaatttatcactctctaaaaa-aatactctttcaaaaaatgtgaaagatttctcaattttcc 1839701  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 10878728 - 10878659
Alignment:
Q  8 attaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    |||||||||| ||| |||||||| |||||||||| |||||| |  | |||||||||||||||||| |||||    
T  10878728 attaatttatcactctctaaaaa-aatactctttcaaaaaaagttaaagatttctcaattttcccttatat 10878659  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 30590 - 30655
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttccc 72  Q
    ||||||||||| | | |||||||| | ||||||||||||||||  || ||||||||||||| ||||    
T  30590 cattaatttatcattctctaaaaaaactactcttttaaaaaatttaaaagatttctcaattctccc 30655  T

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Target: scaffold0119; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 37258 - 37323
Alignment:
Q  7 cattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttccc 72  Q
    ||||||||||| | | |||||||| | ||||||||||||||||  || ||||||||||||| ||||    
T  37258 cattaatttatcattctctaaaaaaactactcttttaaaaaatttaaaagatttctcaattctccc 37323  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 33184302 - 33184373
Alignment:
Q  6 acattaatttattactttctaaaaataatactcttttaaaaaatgcaagagatttctcaattttcccatatat 78  Q
    |||||||||||| ||| |||||||| |||||||||| |||||||   | |||||||| ||||||||| |||||    
T  33184302 acattaatttatcactctctaaaaa-aatactctttcaaaaaatatgaaagatttcttaattttcccttatat 33184373  T

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