View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_23 (Length: 320)
Name: NF2117_low_23
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 4287009 - 4286721
Alignment:
| Q |
17 |
atatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttc |
116 |
Q |
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| T |
4287009 |
atatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttc |
4286910 |
T |
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| Q |
117 |
taatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286909 |
taatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttat |
4286810 |
T |
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| Q |
217 |
tattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgat |
305 |
Q |
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| T |
4286809 |
tattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgat |
4286721 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
108 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
162 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
61 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
122 |
Q |
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|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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