View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_24 (Length: 311)
Name: NF2117_low_24
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 4803931 - 4804192
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctat |
120 |
Q |
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| T |
4803931 |
acatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctat |
4804030 |
T |
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| Q |
121 |
tcaaggctgcaatgcacgatttcgagatatatatcaaggctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgtt |
220 |
Q |
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| T |
4804031 |
tcaaggctgcaatgcacgatttcgagatatatatcaaggctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgtt |
4804130 |
T |
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| Q |
221 |
attgttggactcccatacatatctagcatcaatgcagaaaatcttcaccattctttctttcc |
282 |
Q |
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||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
4804131 |
attattggactcccttacatatctagtatcaatgcagcaaatcttcaccattctttctttcc |
4804192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 4835674 - 4835756
Alignment:
| Q |
4 |
actatgtcagttgtataacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
86 |
Q |
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| T |
4835674 |
actatgtcagctgtataacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
4835756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 4798042 - 4797949
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgat |
114 |
Q |
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| T |
4798042 |
acatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctggttcatagatggcaagttgat |
4797949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 10779323 - 10779451
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctat |
120 |
Q |
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|||||||||| |||||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| | | ||||||||||||||||||||||| | | |
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| T |
10779323 |
acatgtttttcaacatcagtgctgaagaaaaggt-cttgctgcgacattactttactacataatcaagattttgctcatagataggaagttgattgttgt |
10779421 |
T |
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| Q |
121 |
tcaaggctgcaatgcacgatttcgagatat |
150 |
Q |
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| T |
10779422 |
tccacactgcaatgcgcgatttcgagatat |
10779451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 4819528 - 4819657
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctat |
120 |
Q |
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| T |
4819528 |
acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttgattgttgt |
4819627 |
T |
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| Q |
121 |
tcaaggctgcaatgcacgatttcgagatat |
150 |
Q |
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| T |
4819628 |
gccacactgcaatacgcgatttcgagatat |
4819657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 4814946 - 4815029
Alignment:
| Q |
20 |
aacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagat |
103 |
Q |
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| T |
4814946 |
aacatgtttttcaacatcaattccaaagaaaaggttcttacagcaacattgctttaatacatcatcaagatcgggctcatagat |
4815029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 4824461 - 4824531
Alignment:
| Q |
44 |
gaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgat |
114 |
Q |
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|||||| ||||| || |||||||||||||||||| | |||||| |||||||| ||||||||||| ||||| |
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| T |
4824461 |
gaagaagaggtttttgatgcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgat |
4824531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 4829328 - 4829420
Alignment:
| Q |
21 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagataggaagttgat |
114 |
Q |
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| T |
4829328 |
acatattttttaacatcatagctgaagaaaag-ttcttgccacgaaattgctttgctacatcatcaagaccaggctcgtagatgggaagttgat |
4829420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4807483 - 4807532
Alignment:
| Q |
20 |
aacatgttttttgacatcaatgctgaagaaaaggttctttctgcgacatt |
69 |
Q |
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||||||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
4807483 |
aacatgtttttcaacatcaattctgaagaaaaggttcttattgcgacatt |
4807532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 18937622 - 18937691
Alignment:
| Q |
33 |
acatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcaatacctggctcatagat |
103 |
Q |
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| T |
18937622 |
acatcaatgctaaagaaaaggtttttgccgtgacattactttactacatcat-aagacttggctcatagat |
18937691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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