View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_low_26 (Length: 305)

Name: NF2117_low_26
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_low_26
NF2117_low_26
[»] chr6 (2 HSPs)
chr6 (57-257)||(11295200-11295400)
chr6 (103-191)||(6056116-6056204)
[»] chr7 (1 HSPs)
chr7 (93-191)||(7189569-7189667)
[»] chr1 (2 HSPs)
chr1 (57-174)||(9599695-9599811)
chr1 (103-152)||(39140400-39140449)
[»] chr4 (1 HSPs)
chr4 (57-152)||(45205149-45205243)
[»] chr5 (2 HSPs)
chr5 (103-182)||(36200639-36200718)
chr5 (159-191)||(17340874-17340906)
[»] chr3 (2 HSPs)
chr3 (87-152)||(27917459-27917524)
chr3 (103-196)||(38849937-38850030)
[»] chr2 (2 HSPs)
chr2 (101-190)||(24583950-24584039)
chr2 (103-196)||(41763387-41763480)
[»] chr8 (1 HSPs)
chr8 (103-147)||(13589331-13589375)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 57 - 257
Target Start/End: Original strand, 11295200 - 11295400
Alignment:
Q  57 gtcaatcctaatcttatccccgtctattcataccattcattcgacacaacatcatcatctctactacgcttacttgatttttatgttggttcttaatccc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11295200 gtcaatcctaatcttatccccgtctattcataccattcattcgacacaacatcctcatctctactacgcttacttgatttttatgttggttcttaatccc 11295299  T
Q  157 ttaacactttgtaccatataacattgtcggtctgattgttattatccgataatattttttataaatttaatcaatacttttttatcgcttaaaacacatg 256  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11295300 ttaacactttgtaccatataacatcatcggtctgattgttattatccgataatattttttataaatttaatcaatactttcttatcgcttaaaacacatg 11295399  T
Q  257 a 257  Q
    |    
T  11295400 a 11295400  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 6056116 - 6056204
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattgtcggtctga 191  Q
    |||||||  ||| ||||||||||||||||||||||  ||||||||||||| | |  ||||||  ||| |||||||||||||||||||||    
T  6056116 caacatccgcatttctactacgcttacttgattttcgtgttggttcttaaccacccaacactccgtatcatataacattgtcggtctga 6056204  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 7189569 - 7189667
Alignment:
Q  93 tcattcgacacaacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattgtcggtctga 191  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||||| ||||||||||||| | |  |||||| ||||||||| ||||| ||||||||||    
T  7189569 tcattcaacacaacatcctcatctccactatgcttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctga 7189667  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 9599695 - 9599811
Alignment:
Q  57 gtcaatcctaatcttatccccgtctattcataccattcattcgacacaacatcatcatctctactacgcttacttgatttttatgttggttcttaatccc 156  Q
    |||| |||||||| |||||| ||||| || ||||| |||| | |||||||||| |||||||| |||||||||||||||| || |||||||||| || | |    
T  9599695 gtcattcctaatcatatccc-gtctagtcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattattgtgttggttctcaaccgc 9599793  T
Q  157 ttaacactttgtaccata 174  Q
      ||||||||||| ||||    
T  9599794 acaacactttgtatcata 9599811  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 39140449 - 39140400
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggttcttaa 152  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  39140449 caacatcctcatctctactacgcttacttgattttcatgatggttcttaa 39140400  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 45205149 - 45205243
Alignment:
Q  57 gtcaatcctaatcttatccccgtctattcataccattcattcgacacaacatcatcatctctactacgcttacttgatttttatgttggttcttaa 152  Q
    |||| |||||||| |||||| ||||| || ||||| |||| | |||||||||| |||||||  |||||||||||||||| |  |||||||||||||    
T  45205149 gtcattcctaatcctatccc-gtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaa 45205243  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 36200718 - 36200639
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattg 182  Q
    ||||||| ||||||||  ||||||||||||||| | | |||||||||||| | | || ||||||||| |||| |||||||    
T  36200718 caacatcctcatctctgatacgcttacttgattctcacgttggttcttaaccgcctaccactttgtatcatacaacattg 36200639  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 17340874 - 17340906
Alignment:
Q  159 aacactttgtaccatataacattgtcggtctga 191  Q
    ||||||||||| |||||||||||||||||||||    
T  17340874 aacactttgtatcatataacattgtcggtctga 17340906  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 27917524 - 27917459
Alignment:
Q  87 taccattcattcgacacaacatcatcatctctactacgcttacttgatttttatgttggttcttaa 152  Q
    ||||| |||| | |||||||||| |||||||| |||||||||||||||| |  | |||||||||||    
T  27917524 taccactcatccaacacaacatcctcatctctgctacgcttacttgattctcgttttggttcttaa 27917459  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 38850030 - 38849937
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattgtcggtctgattgtt 196  Q
    ||||||| |||||||| |||| ||||||||||| |  |||||  |||||| | |  |||||||||||||||| ||||| |||||| ||| ||||    
T  38850030 caacatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacactttgtaccatacaacatcgtcggtgtgactgtt 38849937  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 24583950 - 24584039
Alignment:
Q  101 cacaacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattgtcggtctg 190  Q
    ||||||||| |||||||| |||| ||||||||||| |  |||||  |||||| | |  |||| ||||||||||| ||||| |||||||||    
T  24583950 cacaacatcttcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattttgtaccatacaacatcgtcggtctg 24584039  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 41763387 - 41763480
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacattgtcggtctgattgtt 196  Q
    ||||||| |||||||  |||| ||||||| | | |  ||||||||||||| | |  |||||| ||||||||| ||||||| |||||||||||||    
T  41763387 caacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctgtaccatacaacattgccggtctgattgtt 41763480  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 13589375 - 13589331
Alignment:
Q  103 caacatcatcatctctactacgcttacttgatttttatgttggtt 147  Q
    ||||||| |||||| | |||||||||||||||||| |||||||||    
T  13589375 caacatcttcatctatgctacgcttacttgattttcatgttggtt 13589331  T

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