View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2117_low_27 (Length: 285)
Name: NF2117_low_27
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 267
Target Start/End: Original strand, 10978943 - 10979208
Alignment:
| Q |
2 |
aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac |
101 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
10978943 |
aattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaac |
10979042 |
T |
|
| Q |
102 |
atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa |
201 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10979043 |
atcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaa |
10979142 |
T |
|
| Q |
202 |
ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttt |
267 |
Q |
| |
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||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10979143 |
ggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaatttt |
10979208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 10932590 - 10932853
Alignment:
| Q |
4 |
ttcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacat |
103 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| || || || |||| |||||| |
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| T |
10932590 |
ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat |
10932689 |
T |
|
| Q |
104 |
cctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aaaactttatccattgaag |
202 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
10932690 |
cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag |
10932789 |
T |
|
| Q |
203 |
gacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
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||||||| | ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10932790 |
gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaattt |
10932853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 10903048 - 10903312
Alignment:
| Q |
2 |
aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac |
101 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||| ||||||| |||| |
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| T |
10903048 |
aattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatctccaac |
10903147 |
T |
|
| Q |
102 |
atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa |
201 |
Q |
| |
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|| || ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10903148 |
gtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattgaa |
10903247 |
T |
|
| Q |
202 |
ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
10903248 |
ggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaattt |
10903312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 10914208 - 10914472
Alignment:
| Q |
2 |
aattcagccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaac |
101 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| ||| || || ||||||| |||| |
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| T |
10914208 |
aattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaac |
10914307 |
T |
|
| Q |
102 |
atcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaa |
201 |
Q |
| |
|
||| || ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10914308 |
atctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattgaa |
10914407 |
T |
|
| Q |
202 |
ggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
|||||||| | |||||||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
10914408 |
ggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaattt |
10914472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 11029070 - 11028836
Alignment:
| Q |
32 |
ttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacatcctctactggtggatcttgtagacagaa |
131 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||| ||| ||||||||||| || ||| ||| || |||||||||||||| |||||||||| |||| || |
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|
| T |
11029070 |
ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa |
11028971 |
T |
|
| Q |
132 |
gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacac |
231 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||| |
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| T |
11028970 |
gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac |
11028871 |
T |
|
| Q |
232 |
cacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |
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| T |
11028870 |
cacaaagccgcagtcatcattttctttgccaattt |
11028836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 11010535 - 11010767
Alignment:
| Q |
19 |
aaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagttgatattatcatcatctgcaacatcctctactggtggat |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||| || | | | |||||| ||| ||||| || |
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|
| T |
11010535 |
aaaagagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------acatccgctattggtgaat |
11010625 |
T |
|
| Q |
119 |
cttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttt |
218 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
11010626 |
cttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggttt |
11010725 |
T |
|
| Q |
219 |
tgtctgaatacaccacaaagccacaatcatcattttctttgc |
260 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||||||||| |
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| T |
11010726 |
tgtctgtatacaccataacgccacaatcatcattttctttgc |
11010767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 10994109 - 10993933
Alignment:
| Q |
90 |
atcatctgcaacatcctctactggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaact |
189 |
Q |
| |
|
||||||| |||||| ||| ||||| ||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||| |
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|
| T |
10994109 |
atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact |
10994010 |
T |
|
| Q |
190 |
ttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
10994009 |
ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaattt |
10993933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 110 - 266
Target Start/End: Complemental strand, 11005405 - 11005249
Alignment:
| Q |
110 |
ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc |
209 |
Q |
| |
|
||||| |||||||| || | | ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
11005405 |
ctggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatc |
11005306 |
T |
|
| Q |
210 |
gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11005305 |
acctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaattt |
11005249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 11032933 - 11033064
Alignment:
| Q |
135 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac |
234 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||||||||||| |
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|
| T |
11032933 |
aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac |
11033032 |
T |
|
| Q |
235 |
aaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
11033033 |
aaagccactatcatcattttctttgccaattt |
11033064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 10901380 - 10901536
Alignment:
| Q |
110 |
ctggtggatcttgtagacagaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatc |
209 |
Q |
| |
|
||||| |||||||| || | | ||||||||| ||||| |||||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||| |
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| T |
10901380 |
ctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatc |
10901479 |
T |
|
| Q |
210 |
gttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
| |||||||||||| ||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
10901480 |
actaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaattt |
10901536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 11007480 - 11007611
Alignment:
| Q |
135 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccac |
234 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||| | |||||||||||| |
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|
| T |
11007480 |
aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac |
11007579 |
T |
|
| Q |
235 |
aaagccacaatcatcattttctttgccaattt |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
11007580 |
aaagccactatcatcattttctttgccaattt |
11007611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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