View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_28 (Length: 279)
Name: NF2117_low_28
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 279214 - 278961
Alignment:
| Q |
12 |
agagaggtctcaattcatctattact---attcacttccttcatgaatccgacaatttagtcaaactattatttggtttggtttggtttaggtcctcctc |
108 |
Q |
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| T |
279214 |
agagaggtctcaattcatctattacttctattcacttccttcatgaatccgacaatttagtcaaactattatttggttttgttt-----aggtcctcctc |
279120 |
T |
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| Q |
109 |
attatatagctaccaccattcacactctcttgtgtata-----cctctatctactatacatagtactatatctgaaaatgaatgcttattctaagattga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279119 |
attatatagctaccaccattcacactctcttgtgtataactcacctctatctactatacatagtactatatctgaaaatgaatgcttattctaagattga |
279020 |
T |
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| Q |
204 |
tacccacaaatcaagatccatagattttttctcattccctcaaacaccaaaaccagttc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279019 |
tacccacaaatcaagatccatagattttttctcattccctcaaacaccaaaaccagttc |
278961 |
T |
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