View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2117_low_3 (Length: 747)

Name: NF2117_low_3
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2117_low_3
NF2117_low_3
[»] chr4 (25 HSPs)
chr4 (18-734)||(2471688-2472404)
chr4 (343-643)||(2460515-2460817)
chr4 (48-200)||(2460268-2460420)
chr4 (344-479)||(2367678-2367813)
chr4 (59-198)||(2547217-2547356)
chr4 (362-479)||(12124764-12124881)
chr4 (344-465)||(2373256-2373376)
chr4 (365-465)||(2621177-2621277)
chr4 (349-488)||(2547459-2547598)
chr4 (364-468)||(2491070-2491174)
chr4 (63-123)||(2533990-2534050)
chr4 (415-489)||(2381369-2381443)
chr4 (63-197)||(2518910-2519044)
chr4 (387-468)||(2486272-2486353)
chr4 (362-479)||(12126820-12126937)
chr4 (65-121)||(5035301-5035357)
chr4 (58-153)||(2475952-2476047)
chr4 (63-202)||(2621395-2621534)
chr4 (63-117)||(5106631-5106685)
chr4 (59-116)||(2546817-2546874)
chr4 (64-116)||(2367981-2368033)
chr4 (63-122)||(2467219-2467278)
chr4 (364-487)||(2525699-2525822)
chr4 (346-468)||(5102100-5102222)
chr4 (63-121)||(2490805-2490863)
[»] chr1 (2 HSPs)
chr1 (349-489)||(15837955-15838095)
chr1 (419-468)||(33161430-33161479)
[»] chr8 (1 HSPs)
chr8 (418-544)||(39516853-39516979)
[»] chr5 (2 HSPs)
chr5 (359-468)||(39252916-39253025)
chr5 (413-474)||(32268761-32268822)
[»] chr7 (1 HSPs)
chr7 (364-462)||(2576415-2576513)


Alignment Details
Target: chr4 (Bit Score: 631; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 18 - 734
Target Start/End: Original strand, 2471688 - 2472404
Alignment:
Q  18 ccttccttgtaatctcgggataatggaggccagattctgtgagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471688 ccttccttgtaatctggggataatggaggccagattctgtgagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtc 2471787  T
Q  118 gatataattaactttggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatattgaaggcacggtaggag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2471788 gatataattaactttggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatattggaggcacggtaggag 2471887  T
Q  218 agatggggcgatttgatgtatgaattagggaaagtggaaagacggagcgatttgatgtctgataaattagggaaagtggagatttcaacaagaagggcat 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471888 agatggagcgatttgatgtatgaattagggaaagtggaaagacggagcgatttgatgtctgataaattagggaaagtggagatttcaacaagaagggcat 2471987  T
Q  318 cgaggtcaattctttcggaaaagagagagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471988 cgaggtcaattctttcggaaaagagagagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagat 2472087  T
Q  418 tgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaag 517  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2472088 tgtgagggagaatcagagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcaaggaatttgaag 2472187  T
Q  518 atgctctcccatatttcctctggtaaacttgaacctgacgcggccttcatttttcttcttcgtttcttacggnnnnnnnctgtcgcaaccattgttgaaa 617  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2472188 atgctctcccatatttcctctggtaaacttgaacctgatgcggccttcatttttcttcttcgtttcttacggtttttttctgtcgcaaccattgttgaaa 2472287  T
Q  618 ttctcttaattcattcattcattcccccgaaggctgctattatttataggtcaaaactaaactcttctcaatcaaatttannnnnnnagaggtcttctca 717  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||||    
T  2472288 ttctcttaactcattcattcattcccccgaaggctgctattatttataggtcaaaactaaactcttctcaatcaatttattttttttagaggtcttctca 2472387  T
Q  718 atctgcttaattattat 734  Q
    |||||||| ||||||||    
T  2472388 atctgctttattattat 2472404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 343 - 643
Target Start/End: Original strand, 2460515 - 2460817
Alignment:
Q  343 agagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacag---tagattgtgagggagaatcggagacga 439  Q
    |||||||||||||||||| |||||||| |||||||  |||| | || |||||||||| |||| |  |  |   | |||| |||| |||||||||||||||    
T  2460515 agagatgtcgagagaggttaggttaggaaacctttgaaagatgagacgaaggaaaggaattgctctatcggttttgattttgagagagaatcggagacga 2460614  T
Q  440 ttggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaagatgctctcccatatttcctctg 539  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2460615 ttggtgatggagaggaactgtttggagaccatggagagagatttgaaagtgtggtggttgtcgtcgaggaatttgaagatgctctcccatatttcctctg 2460714  T
Q  540 gtaaacttgaacctgacgcggccttcatttttcttcttcgtttcttacggnnnnnnnctgtcgcaaccattgttgaaattctcttaattcattcattcat 639  Q
    |||||  ||||| ||| ||||||||||||||| || ||||||||||| ||       |||  || |||||||||||| ||||||||| |||||||||| |    
T  2460715 gtaaatgtgaacatgatgcggccttcatttttgttgttcgtttctta-ggttttttcctgctgccaccattgttgaagttctcttaactcattcattcct 2460813  T
Q  640 tccc 643  Q
    ||||    
T  2460814 tccc 2460817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 2460268 - 2460420
Alignment:
Q  48 cagattctgtgagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagaga 147  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| ||||| || | |||||| ||| |    
T  2460268 cagattctgtgaggatgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttgtccatatatttaacatttgtacaattgagaaa 2460367  T
Q  148 tgtcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatat 200  Q
    ||||||||| ||||||||||  |||||| |||||||||||||||||| |||||    
T  2460368 tgtcaattttttcatctttttggacagaactcgcaatccatcttcagaaatat 2460420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 344 - 479
Target Start/End: Complemental strand, 2367813 - 2367678
Alignment:
Q  344 gagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattgg 443  Q
    |||| |||||| || |||||||| |||||||||| ||| ||| ||| ||||||||||||||||| |  | | ||||  | ||||||||||||||| ||||    
T  2367813 gagaagtcgagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttgg 2367714  T
Q  444 tgatggagaaaaactgtttggagaccatggaaagag 479  Q
    ||||||||| ||| ||||||||||| ||||||||||    
T  2367713 tgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 2547217 - 2547356
Alignment:
Q  59 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttct 158  Q
    |||||||||||||| |||||||| ||||||||||| || ||||| | || |||||||  |||| |  | | |||||||||| | ||||| ||||| || |    
T  2547217 agggtgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttt 2547316  T
Q  159 tcatcttttcagacagagctcgcaatccatcttcaggaat 198  Q
    ||||||||||||||| ||||||||| |||| | |||||||    
T  2547317 tcatcttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 362 - 479
Target Start/End: Original strand, 12124764 - 12124881
Alignment:
Q  362 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgt 460  Q
    ||||| |||||||||| ||||||| | | ||||||||||||||||||| ||| |||||| || ||| ||| ||||||| ||||||||||||| ||| |||    
T  12124764 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcag-agattgcgatggaaaattggagacggttggtgatggagagaaattgt 12124862  T
Q  461 ttggagaccatggaaagag 479  Q
    |||||||| ||||| ||||    
T  12124863 ttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 2373376 - 2373256
Alignment:
Q  344 gagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattgg 443  Q
    |||| |||||| ||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||| |  | | ||||  | ||||||||||||| ||||||    
T  2373376 gagaggtcgagggaggtgaggttggggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattgg 2373278  T
Q  444 tgatggagaaaaactgtttgga 465  Q
    ||||||||| ||| ||||||||    
T  2373277 tgatggagagaaattgtttgga 2373256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 2621277 - 2621177
Alignment:
Q  365 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttgg 464  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| || ||||| ||||||||||| |||||||||||||    
T  2621277 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 2621178  T
Q  465 a 465  Q
    |    
T  2621177 a 2621177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 488
Target Start/End: Original strand, 2547459 - 2547598
Alignment:
Q  349 gtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatg 448  Q
    |||||| || |||| |||||||||||||| ||||| |||| ||||| || ||||  | | || | |||||||||  ||||| |||||||| |||||||||    
T  2547459 gtcgagtgatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatg 2547558  T
Q  449 gagaaaaactgtttggagaccatggaaagagatttgaaag 488  Q
    || | ||||||||||||||| ||||| || ||||| ||||    
T  2547559 gacagaaactgtttggagacgatggagagcgattttaaag 2547598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 364 - 468
Target Start/End: Original strand, 2491070 - 2491174
Alignment:
Q  364 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttg 463  Q
    ||||||||||||||| |||||  ||| |||||||||||||||| ||  | |||||||||  || ||||||||||| || |||||||| | |||||||||     
T  2491070 gttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgtttt 2491169  T
Q  464 gagac 468  Q
    |||||    
T  2491170 gagac 2491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 2533990 - 2534050
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatata 123  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| ||||||    
T  2533990 tgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatata 2534050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 2381443 - 2381369
Alignment:
Q  415 gattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagt 489  Q
    |||| ||| ||||||||||||||  |||||||| ||||  |||||||||||||| ||||||||||| ||||||||    
T  2381443 gattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagt 2381369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 2518910 - 2519044
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcat 162  Q
    ||||||||| ||||||||| ||||||||||| || |||||||||| |||||||| |||||| || | ||   ||||| | ||| ||||||| || |||||    
T  2518910 tgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcat 2519009  T
Q  163 cttttcagacagagctcgcaatccatcttcaggaa 197  Q
     |||| ||||| |||| |||| || |||| |||||    
T  2519010 gttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 468
Target Start/End: Original strand, 2486272 - 2486353
Alignment:
Q  387 gatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 468  Q
    |||||||||||||||||||||    | |||||||||  |||||||||||||| ||||||||||| | ||||||||| |||||    
T  2486272 gatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagac 2486353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 479
Target Start/End: Original strand, 12126820 - 12126937
Alignment:
Q  362 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtt 461  Q
    ||||| |||||||||| ||| ||| | | ||||||||||||| |||||    ||| || || ||||||| ||||||| ||||||||||||| ||| ||||    
T  12126820 aggttggggaaccttttgaataggcggtcaaggaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtt 12126919  T
Q  462 tggagaccatggaaagag 479  Q
    ||||||| ||||| ||||    
T  12126920 tggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 5035301 - 5035357
Alignment:
Q  65 agttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 121  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| |||||||| ||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgata 5035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 2475952 - 2476047
Alignment:
Q  58 gagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaa 153  Q
    |||| ||| |||||||||||||||||| |||| |||||  |||||||||| || ||||| |||||||||   |||| ||||| | |||||||||||    
T  2475952 gaggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaa 2476047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 2621534 - 2621395
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcat 162  Q
    ||||||||||||||||||| ||||||||||| |  ||||| |||| |||||||  ||| | ||||| |  | ||||| | ||||||||||| || |||||    
T  2621534 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcat 2621435  T
Q  163 cttttcagacagagctcgcaatccatcttcaggaatattg 202  Q
     ||||  || | ||||||||| ||||||  ||||||||||    
T  2621434 atttttggagaaagctcgcaacccatctgtaggaatattg 2621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 5106685 - 5106631
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtc 117  Q
    ||||||||||||||||||| ||||||||||| || |||||||||| | |||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 5106631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 2546817 - 2546874
Alignment:
Q  59 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt 116  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| | || ||||||||    
T  2546817 agggtgaattcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  64 gagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt 116  Q
    |||||||||||||||||| ||||||||||| || |||||||||| | ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 2467219 - 2467278
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatat 122  Q
    |||| |||||||||||||| ||||||||||| || ||||| ||||  |||||||||||||    
T  2467219 tgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatat 2467278  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 2525699 - 2525822
Alignment:
Q  364 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttg 463  Q
    ||||||||||||||| |||||  ||| ||| |||||||| ||| ||  | |||||||||   ||||||| ||||  ||||||||||| | |||||||||     
T  2525699 gttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgtttt 2525798  T
Q  464 gagaccatggaaagagatttgaaa 487  Q
    ||||| | ||| |||||| |||||    
T  2525799 gagacgagggagagagatctgaaa 2525822  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 468
Target Start/End: Complemental strand, 5102222 - 5102100
Alignment:
Q  346 gatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcggagacgattggt 444  Q
    ||||| ||| || |||| |||||||||||||||||| ||| || ||| ||||||||| |||  | |||| ||||||||  |||||||| |||| ||| ||    
T  5102222 gatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagt-gattgtgaccgagaatcgaagactattagt 5102124  T
Q  445 gatggagaaaaactgtttggagac 468  Q
    ||| || ||||||||||| |||||    
T  5102123 gatagacaaaaactgtttcgagac 5102100  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 2490805 - 2490863
Alignment:
Q  63 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 121  Q
    ||||||| ||||||||||| ||||||||||| || || ||||||| |||||||| ||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgata 2490863  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 349 - 489
Target Start/End: Complemental strand, 15838095 - 15837955
Alignment:
Q  349 gtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatg 448  Q
    ||||||||| || |||||||||||||||| |||||||| | ||| |||||||||||||| |     |||| ||||||||||||||||||| |||||||||    
T  15838095 gtcgagagatgttaggttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatg 15837996  T
Q  449 gagaaaaactgtttggagaccatggaaagagatttgaaagt 489  Q
    |||| |||||||||||||||||| || || || ||||||||    
T  15837995 gagagaaactgtttggagaccatcgagagggacttgaaagt 15837955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 33161430 - 33161479
Alignment:
Q  419 gtgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 468  Q
    ||||| |||||||| |||| ||| |||||||||| |||||||||||||||    
T  33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagac 33161479  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 418 - 544
Target Start/End: Original strand, 39516853 - 39516979
Alignment:
Q  418 tgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaag 517  Q
    ||||| |||||||| |||||| |||||||||| || ||| ||| ||||||| ||||| ||||| |||||||| |||||||   |||||||||||||||||    
T  39516853 tgtgacggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttgaag 39516952  T
Q  518 atgctctcccatatttcctctggtaaa 544  Q
    ||   ||||||||| ||||| ||||||    
T  39516953 atagactcccatatatcctccggtaaa 39516979  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 39253025 - 39252916
Alignment:
Q  359 gtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaact 458  Q
    |||||||| ||||||||||| |||||  || ||||| |||||||||||| |  |  ||||| ||||||| |||||||||| ||| ||||||||| |||||    
T  39253025 gtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaact 39252926  T
Q  459 gtttggagac 468  Q
    || |||||||    
T  39252925 gtatggagac 39252916  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 474
Target Start/End: Original strand, 32268761 - 32268822
Alignment:
Q  413 tagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatgga 474  Q
    |||| |||||| |||||||| ||||| |||||||||||||  |||||||||||||| |||||    
T  32268761 tagactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga 32268822  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 364 - 462
Target Start/End: Complemental strand, 2576513 - 2576415
Alignment:
Q  364 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgttt 462  Q
    |||||||| ||||||||||||| ||  || ||||||||| |||  |  |  ||||||||  |||||||| ||||||||||||||||| |||||||||||    
T  2576513 gttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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