View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_31 (Length: 251)
Name: NF2117_low_31
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9163556 - 9163752
Alignment:
| Q |
1 |
atcaaatatataattaatctaatatgctgactaatttatggaccatgtatataaattaatcatataagcataaacttttcaatgtttgatgtactaaaag |
100 |
Q |
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| T |
9163556 |
atcaaatatataattagtctaatatgctgactaatttatggaccatgtatataaattaatcatataagcataaacttttcaatgtttcacgtaccaaaag |
9163655 |
T |
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| Q |
101 |
tctaaaaccaatcaaaaagaaacgtgtatgttactgggatgaaaagtatactttcttatatatagaactatagattattactttgatgatggaaatg |
197 |
Q |
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| T |
9163656 |
tctaaaaccaatgaaaaagaaacgtgtatgttactgggatgaaaagtatactttcttatgtatagaactatagattattactttgatgatggaaatg |
9163752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 9166818 - 9166872
Alignment:
| Q |
4 |
aaatatataattaatctaatatgctgactaatttatggaccatgtatataaatta |
58 |
Q |
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| T |
9166818 |
aaatatataattagtctaacatgctgactaatttatggaccatgtatataaatta |
9166872 |
T |
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