View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_33 (Length: 242)
Name: NF2117_low_33
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13020627 - 13020404
Alignment:
| Q |
1 |
ctactagacatctttataaaattcaataatttcaatcctaagtgaatcctagaaaacaaatatactatactactttagttttggatatatatgtgacctt |
100 |
Q |
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| T |
13020627 |
ctactagacatctttataaaattcaataatttcaagcctaggtgaatcctagaaaacaaatatactatactactttagttttggatatatatgtgacctt |
13020528 |
T |
|
| Q |
101 |
aatcttagtgatttggtatagaaaatgtaatgtatggaaatttcaaagacaaattgaaataggatatggagataagtgcactaaggagtgagtagctagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
13020527 |
aatcttagtgatttggtatagaaaatgtaatgtatggaaatttcaaagacaaattgaaataggatatggagataggtgcactaaggagtgactagcttcc |
13020428 |
T |
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| Q |
201 |
aacaatgaatggggaagggatagt |
224 |
Q |
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||||| |||||||||||||||||| |
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| T |
13020427 |
aacaaggaatggggaagggatagt |
13020404 |
T |
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