View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_4 (Length: 723)
Name: NF2117_low_4
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 314 - 699
Target Start/End: Complemental strand, 4141724 - 4141339
Alignment:
| Q |
314 |
gataaagttaacaaagcttatggatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
413 |
Q |
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| T |
4141724 |
gatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataatattcctcatcctc |
4141625 |
T |
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| Q |
414 |
cttctcaaagctaagctccatatgagttaaagtgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttcaag |
513 |
Q |
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| T |
4141624 |
cttctcaaagctaagctccatatgagttaaattgaaaaactgagtagtgtcttgttgttcagatgtttgtactggtgcgacatagtcaaacaatttcaag |
4141525 |
T |
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| Q |
514 |
ggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctt |
613 |
Q |
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| T |
4141524 |
ggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtgggctt |
4141425 |
T |
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| Q |
614 |
tgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcattggtggtgaca |
699 |
Q |
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| T |
4141424 |
tgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcattggtggtgaca |
4141339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 4142314 - 4142240
Alignment:
| Q |
14 |
agaacacaaagtagacaacggtaccataaagagaccagctgcagcatgagcagcactgtcatatagaaaataagt |
88 |
Q |
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| T |
4142314 |
agaacacaaagtcgacatcagtaccataaagagaccagctgcaacacgagcagcactgtcatatagaaaacaagt |
4142240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 4141880 - 4141824
Alignment:
| Q |
172 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
228 |
Q |
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| T |
4141880 |
aaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcc |
4141824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 4141998 - 4141956
Alignment:
| Q |
132 |
aagtgtaattcttcgatcattcggagcagcttatttctgtaaa |
174 |
Q |
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| T |
4141998 |
aagtgtaattctttgatcatttggagctgcttatttctgtaaa |
4141956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 314 - 699
Target Start/End: Original strand, 3854914 - 3855284
Alignment:
| Q |
314 |
gataaagttaacaaagcttatggatcacaatactttgaagagaggggcaggcgcagatgaatttcttcaaccaatcccaatga---taatattcctcatc |
410 |
Q |
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| T |
3854914 |
gataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgacaataatattcctcatc |
3855013 |
T |
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| Q |
411 |
ctccttctcaaagctaagctccatatgagttaaagtgaaaaactgagcagtgtcttgttgttcaggtgtttgtaccggcgcgacatagtcaaacaatttc |
510 |
Q |
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| T |
3855014 |
ctctttctcaaagctaagctccacatgagttaaattgaaaaactgagt------------------tgtctgtactggcgcgacatagttaaacaatttc |
3855095 |
T |
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| Q |
511 |
aagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatagaagaagagtcggaaatgtggg |
610 |
Q |
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| T |
3855096 |
aagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaataagaaatagaagaagagtcagaaatgtggg |
3855195 |
T |
|
| Q |
611 |
ctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcattggtggtgaca |
699 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
3855196 |
atttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgaca |
3855284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 3854777 - 3854833
Alignment:
| Q |
172 |
aaattgtggatgcaatgaattatgatcattgccgcttaatccatagcctcctcctcc |
228 |
Q |
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| T |
3854777 |
aaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 41541991 - 41541943
Alignment:
| Q |
589 |
gaagaagagtcggaaatgtgggctttgagcaatttggggaagggtttta |
637 |
Q |
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| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtttta |
41541943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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