View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_5 (Length: 642)
Name: NF2117_low_5
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 37626596 - 37627221
Alignment:
| Q |
1 |
tgctcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcattgtatcatcgtatcagtgaccagtgattgtttgatcaa |
100 |
Q |
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| T |
37626596 |
tgctcaagattacactataataaaaaattgaattaagtgtgtattgaatggattggttgcattgcatcctcgtatcagtgaccagtgattgtttgatcaa |
37626695 |
T |
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| Q |
101 |
ggtcatctgacagtatttgtgattgaaaaaataaaatttgcttgatttctacaccgtccgacctttatccacaatggtcaccaatgtgctgaatgtagaa |
200 |
Q |
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| T |
37626696 |
ggtcatctgacagtatttgagatttaaaaattaaa-tttgcttgatttctacaccgtccgacctttatcca--atggtcaccaatgtgctgaatgtagaa |
37626792 |
T |
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| Q |
201 |
atgcaagaaatttgtgactgcaccaaatttgaatccgtattgaatactatatcacactaccaaaaagttgaattagaaaaagattcttaaataagaatca |
300 |
Q |
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| T |
37626793 |
atgcaagaaatttgtgactgcaccaaatttgaatccgtattgaatactatatcacactaccaaaaagttgaattagaaaaagattcttaaataagaaaca |
37626892 |
T |
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| Q |
301 |
attgatttttaattttgctttttcctagtagtgctaacnnnnnnnnncaaattcaaatgatgtatgccaagaatgcaacaatttccctgagaaatgctac |
400 |
Q |
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| T |
37626893 |
attgatttttaattttgctttttcctagtagttctaccttgttttttcaaattcaaatgatgtatgccaagaatgcaacaatttcccttagaaatgctac |
37626992 |
T |
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| Q |
401 |
attttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaacagagtgtttct |
500 |
Q |
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| T |
37626993 |
attttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagatagaccaacagagtgtttct |
37627092 |
T |
|
| Q |
501 |
tatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgatgacatctttga |
600 |
Q |
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| T |
37627093 |
tatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgatgacatctttga |
37627192 |
T |
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| Q |
601 |
caattatggtacattagaggatcttgttc |
629 |
Q |
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| T |
37627193 |
caattatggtacattagaggatcttgttc |
37627221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 390 - 629
Target Start/End: Original strand, 37618569 - 37618807
Alignment:
| Q |
390 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
489 |
Q |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
|
| Q |
490 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
589 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggat |
37618767 |
T |
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| Q |
590 |
gacatctttgacaattatggtacattagaggatcttgttc |
629 |
Q |
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|| |||||||||| |||||| |||||||| || ||||||| |
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| T |
37618768 |
gatatctttgacacttatggaacattagatgaacttgttc |
37618807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37618214 - 37618276
Alignment:
| Q |
1 |
tgctcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcatt |
63 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
37618214 |
tgctcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcatt |
37618276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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