View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2117_low_9 (Length: 567)
Name: NF2117_low_9
Description: NF2117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2117_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 23447372 - 23447056
Alignment:
| Q |
16 |
catctagaacatgcttcaggcaatttcagcgttcactgaactattaatccatgacataaccatggtgttgcaacagtcttggagtcatgatcttcattag |
115 |
Q |
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| T |
23447372 |
catctagaacatgcttcagtcaattttagcgttcactgaactattaatccatgacataaccatggtgttgcaacagtcttggagtcatgatcttcattag |
23447273 |
T |
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| Q |
116 |
atggtcttggcaaagtgccattaataaagtggattttgttcttggaacatagtgcaaccatgaaggatcgcaatcaagaatgataaattgctccggttta |
215 |
Q |
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| T |
23447272 |
atggtcttggcaaactgccattaataaagtggattttgttcttggaacataatgca-----------tcgcgatcaagaatgataaattgctccggttta |
23447184 |
T |
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| Q |
216 |
aggggagagaagcaattacagtacctagattgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagattctaataa |
315 |
Q |
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| T |
23447183 |
aggggagagaagcaattacagtacctagactgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagattctaataa |
23447084 |
T |
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| Q |
316 |
ccttgctgttggtggatcctccatggtt |
343 |
Q |
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| T |
23447083 |
ccttgctgttggtggatcctccatggtt |
23447056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 351 - 469
Target Start/End: Complemental strand, 23438122 - 23438004
Alignment:
| Q |
351 |
ttaattaaaccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaatatttttacctttct |
450 |
Q |
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| T |
23438122 |
ttaattagaccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacatttct |
23438023 |
T |
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| Q |
451 |
aatatggtatcagaacata |
469 |
Q |
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| T |
23438022 |
aatatggtattagaacata |
23438004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 23430270 - 23430161
Alignment:
| Q |
360 |
ccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaatatttttacctttctaatatggta |
459 |
Q |
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| T |
23430270 |
ccattaatagttttattacagagttaattttgaccactctctgtaatttcttctcaagcaattttcccaaagagaatacttttacatttcaaatatggta |
23430171 |
T |
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| Q |
460 |
tcagaacata |
469 |
Q |
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| T |
23430170 |
ttagaacata |
23430161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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