View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21180_low_1 (Length: 635)

Name: NF21180_low_1
Description: NF21180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21180_low_1
NF21180_low_1
[»] chr1 (8 HSPs)
chr1 (3-635)||(15452163-15452795)
chr1 (271-315)||(18325187-18325231)
chr1 (268-315)||(32088669-32088716)
chr1 (271-382)||(41516932-41517043)
chr1 (271-317)||(28083982-28084028)
chr1 (268-300)||(6744583-6744615)
chr1 (271-351)||(41517261-41517341)
chr1 (273-337)||(49079288-49079352)
[»] chr7 (8 HSPs)
chr7 (248-374)||(45369084-45369210)
chr7 (271-381)||(21436029-21436140)
chr7 (278-350)||(7087353-7087425)
chr7 (269-316)||(12306920-12306967)
chr7 (270-316)||(48290335-48290381)
chr7 (271-316)||(12306679-12306724)
chr7 (271-316)||(45004965-45005010)
chr7 (268-313)||(48158833-48158878)
[»] chr5 (7 HSPs)
chr5 (271-341)||(29922839-29922909)
chr5 (271-310)||(12208944-12208983)
chr5 (269-316)||(38045392-38045439)
chr5 (271-316)||(1105384-1105429)
chr5 (271-360)||(13224670-13224758)
chr5 (271-341)||(10898667-10898737)
chr5 (276-341)||(29922576-29922641)
[»] chr4 (7 HSPs)
chr4 (271-341)||(25318992-25319062)
chr4 (272-335)||(33560647-33560710)
chr4 (277-362)||(2171738-2171823)
chr4 (272-309)||(24338547-24338584)
chr4 (271-316)||(41058871-41058916)
chr4 (244-316)||(9082917-9082989)
chr4 (269-313)||(29728945-29728989)
[»] chr2 (7 HSPs)
chr2 (268-350)||(33502910-33502992)
chr2 (249-313)||(6925630-6925694)
chr2 (276-315)||(39702528-39702567)
chr2 (274-316)||(4908737-4908779)
chr2 (266-316)||(17505252-17505302)
chr2 (325-382)||(6767673-6767730)
chr2 (271-316)||(11510898-11510943)
[»] chr8 (7 HSPs)
chr8 (271-310)||(13929808-13929847)
chr8 (265-316)||(41614783-41614834)
chr8 (268-334)||(4554276-4554342)
chr8 (265-315)||(11038121-11038171)
chr8 (278-316)||(36447965-36448003)
chr8 (272-316)||(5997378-5997422)
chr8 (271-315)||(8916821-8916865)
[»] chr3 (4 HSPs)
chr3 (270-317)||(43987646-43987693)
chr3 (269-315)||(2410026-2410072)
chr3 (271-315)||(21513425-21513469)
chr3 (268-328)||(48089472-48089532)
[»] scaffold0393 (1 HSPs)
scaffold0393 (276-350)||(12368-12442)
[»] chr6 (7 HSPs)
chr6 (271-349)||(31812254-31812332)
chr6 (271-320)||(19260974-19261023)
chr6 (269-380)||(6214797-6214907)
chr6 (271-315)||(7263016-7263060)
chr6 (268-384)||(29240479-29240595)
chr6 (271-328)||(26550464-26550521)
chr6 (271-315)||(33136579-33136623)


Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 3 - 635
Target Start/End: Original strand, 15452163 - 15452795
Alignment:
Q  3 agaagcataggacatataatgggaacataacacaactgaaaaacaaaaatttcagaagctatacgcacaaacaccaccgaacgtgacactcagacttagg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452163 agaagcataggacatataatgggaacataacacaactgaaaaacaaaaatttcagaagctatacgcacaaacaccaccgaacgtgacactcagacttagg 15452262  T
Q  103 taataacttaagaaataatggaagtgattgaatgcaatgagatatgacgacaatgataaatgtcggacaccaaacatactttaaatttttaagtgtcaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452263 taataacttaagaaataatggaagtgattgaatgcaatgagatatgacgacaatgataaatgtcggacaccaaacatactttaaatttttaagtgtcaat 15452362  T
Q  203 gcttcatagactcaagtcaataattggttccaccattgaaagaagcaaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452363 gcttcatagactcaagtcaataattggttccaccattgaaagaagcaaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgag 15452462  T
Q  303 tagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgcatctataattgaattttagccttgtgcttagggtccaaac 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452463 tagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgcatctataattgaattttagccttgtgcttagggtccaaac 15452562  T
Q  403 cactttaaaccactttacattcagttcacttttaaatataaccaattttactaaatcaattaattcgagaaaatgtacctgtgcgagtgcgtttgagaag 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452563 cactttaaaccactttacattcagttcacttttaaatataaccaattttactaaatcaattaattcgagaaaatgtacctgtgcgagtgcgtttgagaag 15452662  T
Q  503 ctcgcaacctctggctagcaattctctactacaaatgcccaagaaattttcttcaggtgcaagttcaccactgaagctactattggagctgccattacta 602  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452663 ctcgaaacctctggctagcaattctctactacaaatgcccaagaaattttcttcaggtgcaagttcaccactgaagctactattggagctgccattacta 15452762  T
Q  603 ccactgcccccaccaccattaccattacctacc 635  Q
    |||||||||||||||||||||||||||||||||    
T  15452763 ccactgcccccaccaccattaccattacctacc 15452795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 18325231 - 18325187
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  18325231 aattgattttgacatgtttggattttctcgagtagaattgatttt 18325187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 32088716 - 32088669
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    |||||||||||||||||| ||||| || |||| |||||||||||||||    
T  32088716 taaaattgattttgacatgtttggttgctctcaagtagaattgatttt 32088669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 41516932 - 41517043
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgcatctataa 370  Q
    |||||||| ||||||||| | ||||| |||||||||||||||||||  |  | ||||| |||||| |||||  ||||||| |||  |||||| |||  ||    
T  41516932 aattgattatgacatcttggaatgttttcgagtagaattgattttgcgtttaaaattgattctaacttgaagttagaatttggagtttttgcctcttcaa 41517031  T
Q  371 ttgaattttagc 382  Q
    |||| |||||||    
T  41517032 ttgatttttagc 41517043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 28084028 - 28083982
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgt 317  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||    
T  28084028 aattgattctgacatatttggttgttttcgagtagaattgattttgt 28083982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 6744583 - 6744615
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcg 300  Q
    |||||||||||||||||| ||||||||||||||    
T  6744583 taaaattgattttgacatatttggatgttctcg 6744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 41517341 - 41517261
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaattc 351  Q
    |||||||||||||||  |  ||||||||| ||||||| |||||||| ||  |||| || ||||||| |||| |||||||||    
T  41517341 aattgattttgacattctctgatgttctctagtagaactgattttgcattcagaactgattctaatgtgaagctagaattc 41517261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 49079352 - 49079288
Alignment:
Q  273 ttgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatt 337  Q
    ||||||||||||| ||||| | |||| ||||||||||||||| || |||| ||| | ||||||||    
T  49079352 ttgattttgacatgtttggttcttctagagtagaattgatttcgtctcaaaaatcgattctaatt 49079288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 45369084 - 45369210
Alignment:
Q  248 caaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactaga 347  Q
    ||||| |||||||| | || || | |||||||||| || ||||||||||||| ||||||||||||||||  || ||||||| || ||| ||||| |||||    
T  45369084 caaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctaga 45369183  T
Q  348 attcggaacttttgcatctataattga 374  Q
    ||||||| ||||||| |||| ||||||    
T  45369184 attcggagcttttgcctctaaaattga 45369210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 381
Target Start/End: Complemental strand, 21436140 - 21436029
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaa-ttcggaacttttgcatctata 369  Q
    ||||||||||||||| |||  |||||||||||||||||| |||||   || ||||||| || ||| ||||| |||||| || ||| ||||||| ||||      
T  21436140 aattgattttgacatgttttaatgttctcgagtagaatttattttacctcgagaattgattttaacttgaagctagaattttggagcttttgcctctacc 21436041  T
Q  370 attgaattttag 381  Q
    ||||||||||||    
T  21436040 attgaattttag 21436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 7087425 - 7087353
Alignment:
Q  278 tttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaatt 350  Q
    |||||||| |||| ||||| |||||||||||||||||||| |  ||||||| || ||| ||||| ||||||||    
T  7087425 tttgacatgtttgaatgttttcgagtagaattgattttgtttttagaattggttttaacttgaagctagaatt 7087353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 12306920 - 12306967
Alignment:
Q  269 aaaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||||| ||||| || ||| |||||||||||||||||    
T  12306920 aaaattgattttgacatgtttggttgctcttgagtagaattgattttg 12306967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 48290335 - 48290381
Alignment:
Q  270 aaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||||||||||| |||||||||| || || |||||||||||||    
T  48290335 aaattgattttgacatgtttggatgttttcaagcagaattgattttg 48290381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 12306679 - 12306724
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||| ||||| || |||| ||||||||||||||||    
T  12306679 aattgattttgacatgtttggttgctctcaagtagaattgattttg 12306724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 45004965 - 45005010
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttg 45005010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 48158833 - 48158878
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgatt 313  Q
    |||||||||||||||||| ||||| || ||||||||| ||||||||    
T  48158833 taaaattgattttgacatgtttggttgctctcgagtaaaattgatt 48158878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 29922839 - 29922909
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaa 341  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||||| || ||| |||||    
T  29922839 aattgattttgacatgtttggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaa 29922909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 12208983 - 12208944
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattg 310  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  12208983 aattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 38045392 - 38045439
Alignment:
Q  269 aaaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  38045392 aaaattgattttgacatgtttgaatgttctcaagtagaattgattttg 38045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 1105384 - 1105429
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  1105384 aattgattttgacatttttggctgttctcaagtagaattgattttg 1105429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 13224758 - 13224670
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaactttt 360  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||| || | ||||  ||| || ||||| |||||||| ||| |||||    
T  13224758 aattgattttgacatgtttggatgttc-cgagtataattgattttgtttctataattcattcaaacttgaagctagaatttggagctttt 13224670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 10898667 - 10898737
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaa 341  Q
    |||| |||||||||| ||||| || ||||||||| |||||||||||  || ||||||| |||||| |||||    
T  10898667 aattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttgaa 10898737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 29922576 - 29922641
Alignment:
Q  276 attttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaa 341  Q
    |||||||||| ||||  ||||||| ||||||||||||||||  |||||||||| || ||| |||||    
T  29922576 attttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttgaa 29922641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 25318992 - 25319062
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaa 341  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||| || ||||||| |||||| |||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaa 25319062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 33560710 - 33560647
Alignment:
Q  272 attgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaa 335  Q
    |||||||||||||| ||||| || |||||||||||||||||||||  || ||||||| ||||||    
T  33560710 attgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaa 33560647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 2171738 - 2171823
Alignment:
Q  277 ttttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgc 362  Q
    ||||||||| |||||||||||||||||| |||||| ||||   |  |||||| ||| || ||||| |||||||| || ||||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagctagaatttgggacttttgc 2171823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 24338547 - 24338584
Alignment:
Q  272 attgattttgacatctttggatgttctcgagtagaatt 309  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  24338547 attgattttgacatgtttggatgttctcgagtaaaatt 24338584  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 41058871 - 41058916
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||| |||||| |||||||||| ||||||| |||||||||||    
T  41058871 aattgattgtgacatgtttggatgttttcgagtaaaattgattttg 41058916  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 9082989 - 9082917
Alignment:
Q  244 gaagcaaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||| |||| |||||||| ||| ||| |||| ||| |||||| ||||||||||||  | ||||||||||||||    
T  9082989 gaaggaaaattgatttcagatgcatagaattaattctgacatgtttggatgttctgaaatagaattgattttg 9082917  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 29728945 - 29728989
Alignment:
Q  269 aaaattgattttgacatctttggatgttctcgagtagaattgatt 313  Q
    ||||||||||||||||  ||||| || ||||||||||||||||||    
T  29728945 aaaattgattttgacaagtttggttgctctcgagtagaattgatt 29728989  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 33502992 - 33502910
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaatt 350  Q
    |||||||||||||||||| ||||| || ||||||||| || |||||||| ||| ||||||| |||||| ||||| ||||||||    
T  33502992 taaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaatt 33502910  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 6925630 - 6925694
Alignment:
Q  249 aaaactgatttcacatgtataaaattgattttgacatctttggatgttctcgagtagaattgatt 313  Q
    |||| |||||| | |||||||||||| |||||||||| |||| || |||| ||||||||||||||    
T  6925630 aaaattgatttaaaatgtataaaattaattttgacatgtttgtatattcttgagtagaattgatt 6925694  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 39702567 - 39702528
Alignment:
Q  276 attttgacatctttggatgttctcgagtagaattgatttt 315  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  39702567 attttgacatgtttgtatgttctcgagtagaattgatttt 39702528  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 4908737 - 4908779
Alignment:
Q  274 tgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||||||| |||| ||||| |||||||||||||||||||    
T  4908737 tgattttgacatgtttgtatgttttcgagtagaattgattttg 4908779  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 17505302 - 17505252
Alignment:
Q  266 tataaaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||||| ||||| ||| ||| |||||||| |||||||||||||||||    
T  17505302 tataaaattggttttgtcatgttttgatgttcttgagtagaattgattttg 17505252  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 6767673 - 6767730
Alignment:
Q  325 attgcttctaatttgaaactagaattcggaacttttgcatctataattgaattttagc 382  Q
    |||| |||||| ||||| |||||||| ||| ||||||| |||| ||||||||||||||    
T  6767673 attgattctaacttgaagctagaatttggagcttttgcttctacaattgaattttagc 6767730  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 11510898 - 11510943
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||| |||||| || |||||||||| |||||||||||||||||||    
T  11510898 aattggttttgatatgtttggatgttttcgagtagaattgattttg 11510943  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 13929847 - 13929808
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattg 310  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13929847 aattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 41614783 - 41614834
Alignment:
Q  265 gtataaaattgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    ||||||||||||||||||| | |||||||| | || ||||||||||||||||    
T  41614783 gtataaaattgattttgacttgtttggatggtttcaagtagaattgattttg 41614834  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 4554276 - 4554342
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttcta 334  Q
    |||||||||||||||||  ||| | || |||| |||| |||||||||||| |||||||||| |||||    
T  4554276 taaaattgattttgacacatttagttgctctctagtataattgattttgtctcaagaattgattcta 4554342  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 11038121 - 11038171
Alignment:
Q  265 gtataaaattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    ||||| ||||||||||||||| ||||||||||||||| | || ||||||||    
T  11038121 gtatataattgattttgacatgtttggatgttctcgaatggagttgatttt 11038171  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 36448003 - 36447965
Alignment:
Q  278 tttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgattttg 36447965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 5997422 - 5997378
Alignment:
Q  272 attgattttgacatctttggatgttctcgagtagaattgattttg 316  Q
    |||||||||||||| |||||||||| | ||||| |||||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttg 5997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 8916865 - 8916821
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    |||||||||||||||  ||||||||| | ||||||||||||||||    
T  8916865 aattgattttgacataattggatgttattgagtagaattgatttt 8916821  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 43987693 - 43987646
Alignment:
Q  270 aaattgattttgacatctttggatgttctcgagtagaattgattttgt 317  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  43987693 aaattgattttgacatgtttggatgttcttgagtacaattgattttgt 43987646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 2410072 - 2410026
Alignment:
Q  269 aaaattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  2410072 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 21513469 - 21513425
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    |||||||||| ||||  |||||||||||| |||||||||||||||    
T  21513469 aattgattttaacatgcttggatgttctcaagtagaattgatttt 21513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 48089532 - 48089472
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattg 328  Q
    |||||||||||||| ||| ||||| || ||||||||| |||| ||||||  ||||||||||    
T  48089532 taaaattgattttggcatgtttggttgctctcgagtataattaattttgcctcaagaattg 48089472  T

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Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 12442 - 12368
Alignment:
Q  276 attttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaatt 350  Q
    |||||||||| ||||||||||||| ||||||||||||||||  || |||| || |||||| ||||| ||| ||||    
T  12442 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatt 12368  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 31812254 - 31812332
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaat 349  Q
    ||||||||||||||| ||||| |||  |||||||||||| |||||||||  ||||||| |||| | ||||| |||||||    
T  31812254 aattgattttgacatgtttggttgtagtcgagtagaatttattttgtatgtagaattgattctgacttgaagctagaat 31812332  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 19261023 - 19260974
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatc 320  Q
    ||||||||||||||| ||||||||||||||||  |||||||||| |||||    
T  19261023 aattgattttgacatgtttggatgttctcgagatgaattgatttggtatc 19260974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 6214907 - 6214797
Alignment:
Q  269 aaaattgattttgacatctttggatgttctcgagtagaattgatt-ttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgcatcta 367  Q
    ||||||||||||||||| ||||||| ||||||| |||||| |||| |||| || ||||| | |||||| ||||| ||||| || ||||||||||| ||||    
T  6214907 aaaattgattttgacatgtttggattttctcga-tagaatcgattcttgt-tccagaatcgattctaacttgaagctagagtttggaacttttgcctcta 6214810  T
Q  368 taattgaatttta 380  Q
     || ||| |||||    
T  6214809 caactgattttta 6214797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 7263016 - 7263060
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||    
T  7263016 aattgattttgacattttaggatgttctcgagtataattgatttt 7263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 29240595 - 29240479
Alignment:
Q  268 taaaattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattgcttctaatttgaaactagaattcggaacttttgcatcta 367  Q
    |||||||||||||||||| || |||| || || |||||||||||||||   || ||| ||| |||||| ||||| ||| |||| | |  ||||||  |||    
T  29240595 taaaattgattttgacatgttaggatattttcaagtagaattgattttacctccagagttgattctaacttgaagctaaaatttgaagtttttgccccta 29240496  T
Q  368 taattgaattttagcct 384  Q
     ||||||||||||||||    
T  29240495 caattgaattttagcct 29240479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 26550464 - 26550521
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgattttgtatcaagaattg 328  Q
    ||||||||||||||| ||||| ||| ||| | ||||||||||||||| || |||||||    
T  26550464 aattgattttgacatgtttggttgtactcaactagaattgattttgtctctagaattg 26550521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 33136623 - 33136579
Alignment:
Q  271 aattgattttgacatctttggatgttctcgagtagaattgatttt 315  Q
    ||||||||||||||| ||||| || ||||||||| ||||||||||    
T  33136623 aattgattttgacatgtttggttgctctcgagtataattgatttt 33136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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