View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21180_low_2 (Length: 587)

Name: NF21180_low_2
Description: NF21180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21180_low_2
NF21180_low_2
[»] chr3 (16 HSPs)
chr3 (12-418)||(37727618-37728024)
chr3 (12-418)||(33240185-33240591)
chr3 (372-418)||(48058264-48058310)
chr3 (363-418)||(45081476-45081532)
chr3 (364-418)||(17604048-17604102)
chr3 (372-418)||(31595124-31595170)
chr3 (372-418)||(31595873-31595919)
chr3 (372-418)||(54516951-54516997)
chr3 (372-418)||(54524701-54524747)
chr3 (363-427)||(25081550-25081615)
chr3 (363-418)||(1093160-1093216)
chr3 (363-418)||(18387634-18387690)
chr3 (342-418)||(36502368-36502444)
chr3 (364-411)||(45082206-45082254)
chr3 (363-418)||(46915783-46915839)
chr3 (343-418)||(55296506-55296582)
[»] chr1 (18 HSPs)
chr1 (409-571)||(32716673-32716835)
chr1 (364-418)||(10919383-10919437)
chr1 (372-418)||(2070776-2070822)
chr1 (372-418)||(2071485-2071531)
chr1 (364-418)||(23817588-23817642)
chr1 (365-418)||(13505307-13505360)
chr1 (365-418)||(19139620-19139673)
chr1 (372-418)||(4433916-4433962)
chr1 (368-418)||(13649357-13649407)
chr1 (372-418)||(19790829-19790875)
chr1 (372-418)||(25665711-25665757)
chr1 (372-418)||(25670658-25670704)
chr1 (372-418)||(50546071-50546117)
chr1 (343-415)||(15601451-15601524)
chr1 (365-412)||(4929803-4929851)
chr1 (366-418)||(22914697-22914749)
chr1 (363-418)||(36682270-36682326)
chr1 (363-418)||(51097502-51097558)
[»] chr6 (10 HSPs)
chr6 (319-418)||(29344604-29344703)
chr6 (358-418)||(22046415-22046476)
chr6 (358-418)||(22058823-22058884)
chr6 (382-418)||(32260137-32260173)
chr6 (372-418)||(15997548-15997594)
chr6 (363-418)||(30321294-30321350)
chr6 (358-418)||(1859791-1859852)
chr6 (363-418)||(18970658-18970715)
chr6 (358-418)||(22047206-22047267)
chr6 (365-401)||(7588197-7588233)
[»] chr5 (10 HSPs)
chr5 (323-418)||(18861880-18861975)
chr5 (346-408)||(17105364-17105426)
chr5 (372-418)||(33574039-33574085)
chr5 (372-418)||(35424255-35424301)
chr5 (364-418)||(12255123-12255177)
chr5 (365-418)||(24872617-24872670)
chr5 (365-418)||(25746785-25746838)
chr5 (363-418)||(17277760-17277816)
chr5 (363-418)||(22778234-22778290)
chr5 (363-418)||(27365638-27365694)
[»] chr4 (11 HSPs)
chr4 (319-418)||(29881567-29881666)
chr4 (364-418)||(56295223-56295278)
chr4 (364-418)||(1865487-1865541)
chr4 (357-418)||(6050753-6050814)
chr4 (365-418)||(11380268-11380321)
chr4 (364-418)||(55000629-55000684)
chr4 (372-418)||(17736570-17736616)
chr4 (385-418)||(6049813-6049846)
chr4 (357-418)||(50182445-50182506)
chr4 (365-418)||(50303374-50303427)
chr4 (390-418)||(56028651-56028679)
[»] chr2 (5 HSPs)
chr2 (364-418)||(13913465-13913520)
chr2 (333-418)||(3322899-3322985)
chr2 (358-418)||(44356802-44356863)
chr2 (372-418)||(12332056-12332102)
chr2 (358-418)||(44357593-44357654)
[»] scaffold1370 (2 HSPs)
scaffold1370 (364-418)||(918-972)
scaffold1370 (363-418)||(191-247)
[»] chr8 (6 HSPs)
chr8 (372-418)||(16723672-16723718)
chr8 (319-409)||(25229604-25229694)
chr8 (364-418)||(36228494-36228549)
chr8 (372-414)||(28540380-28540422)
chr8 (385-418)||(20105101-20105134)
chr8 (363-399)||(36698631-36698668)
[»] chr7 (3 HSPs)
chr7 (372-418)||(19068454-19068500)
chr7 (358-417)||(41115489-41115549)
chr7 (388-418)||(3772585-3772615)
[»] scaffold0006 (1 HSPs)
scaffold0006 (365-418)||(138542-138595)
[»] scaffold0285 (1 HSPs)
scaffold0285 (363-418)||(17542-17598)
[»] scaffold0085 (1 HSPs)
scaffold0085 (363-418)||(14946-15002)
[»] scaffold0086 (1 HSPs)
scaffold0086 (361-417)||(8441-8498)
[»] scaffold0025 (1 HSPs)
scaffold0025 (363-399)||(150593-150629)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 37728024 - 37727618
Alignment:
Q  12 aagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagatttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37728024 aagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagatttt 37727925  T
Q  112 gattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggatgag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37727924 gattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaggatgag 37727825  T
Q  212 attaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagaagacgaaagaccagcatgtgcctttttta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37727824 attaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagaagatgaaagaccagcatgtgcctttttta 37727725  T
Q  312 atatataaaccgttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctat 411  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37727724 atatataaaccgttgatattaattcaattcaatccaatggctagcatttaatcctctcatctctcattttaagagtcctctcatttgatatgccctatat 37727625  T
Q  412 atatata 418  Q
    |||||||    
T  37727624 atatata 37727618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 33240591 - 33240185
Alignment:
Q  12 aagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagatttt 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33240591 aagaatggaaggtcacatgagcaatagaggttatgacggtgcatcaacctttcgaattcctttgaaccaacaatggagacatggaggaaagtaagatttt 33240492  T
Q  112 gattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggatgag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33240491 gattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaagatgag 33240392  T
Q  212 attaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagaagacgaaagaccagcatgtgcctttttta 311  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33240391 attaaaacatggaacaatttctagaaaaat-gaacaaacaagagaaacccaagcgtgcagctagttagagaagacgaaagaccagcatgtgcctttttta 33240293  T
Q  312 atatataaaccgttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctc-ta 410  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33240292 atatataaaccgttgatattaatccaattcaatccaatggccagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctcata 33240193  T
Q  411 tatatata 418  Q
    ||||||||    
T  33240192 tatatata 33240185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 48058310 - 48058264
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  48058310 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 48058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 45081532 - 45081476
Alignment:
Q  363 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||    
T  45081532 tcctctcatctctcattttaaaaggtgctctcacttgatatgccctatatatatata 45081476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 17604102 - 17604048
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||| | ||| |||||||||||||||||  |||| ||||||||||    
T  17604102 cctctcatctctcactataaaagtcctctcatttgatacaccctatatatatata 17604048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 31595170 - 31595124
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| || | |||||||| |||||||||||||||||||||||    
T  31595170 ctctcatttaaaaactcctctcacttgatatgccctctatatatata 31595124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 31595873 - 31595919
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| || | |||||||| |||||||||||||||||||||||    
T  31595873 ctctcatttaaaaactcctctcacttgatatgccctctatatatata 31595919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 54516997 - 54516951
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| || | ||||||||||||| ||||||||||||||||||    
T  54516997 ctctcatttaaaaactcctctcatttgaaatgccctctatatatata 54516951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 54524701 - 54524747
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  54524701 ctctcattttaaaagtcctctcatttgaaatgtcctatatatatata 54524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 25081550 - 25081615
Alignment:
Q  363 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatatacacacacac 427  Q
    ||||||||||||||| | ||| |  |||||||| |||||||||||| |||||||||| ||||||||    
T  25081550 tcctctcatctctcactataacaactcctctcacttgatatgccctatatatatatatacacacac 25081615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 1093216 - 1093160
Alignment:
Q  363 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||| |||  | |||||||| |||||||||||| ||||||||||    
T  1093216 tcctctcatctctcattgtaactactcctctcacttgatatgccctatatatatata 1093160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 18387690 - 18387634
Alignment:
Q  363 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 418  Q
    |||||| |||||||||| |||  | ||||||||||||||||||||| ||||||||||    
T  18387690 tcctcttatctctcattgtaactactcctctcatttgatatgccctatatatatata 18387634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 36502368 - 36502444
Alignment:
Q  342 aatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||| ||| ||| |  ||||||||||||||   ||| | |||||||| |||||||||||| ||||||||||    
T  36502368 aatccaatggttaggattaaaccctctcatctctcacaataaaactcctctcacttgatatgccctatatatatata 36502444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 45082206 - 45082254
Alignment:
Q  364 cctctcatctctcattttaagag-tcctctcatttgatatgccctctat 411  Q
    |||||||||||||||||||| || |||||||| |||||||| |||||||    
T  45082206 cctctcatctctcattttaaaagatcctctcacttgatatgtcctctat 45082254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 46915839 - 46915783
Alignment:
Q  363 tcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||||  | |||||||| |||||||||| | ||||||||||    
T  46915839 tcctctcatctctcattttaacaactcctctcacttgatatgccatatatatatata 46915783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 55296582 - 55296506
Alignment:
Q  343 atccaatggctagcatttagtcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| ||  ||| |||| |||||||||||||  |||  | ||||||||||||||||||||| ||||||||||    
T  55296582 atccaatggttattattaagtcatctcatctctcataataaccactcctctcatttgatatgccctatatatatata 55296506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 8e-75; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 409 - 571
Target Start/End: Original strand, 32716673 - 32716835
Alignment:
Q  409 tatatatatacacacacactattgagttttcctgataacctagtttgctcttatatattgttcataaccttttgaaaccgataattatcgctcttcacac 508  Q
    |||||||||| | | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716673 tatatatatatatatacactattgagtctttctgataacctagtttgctcttatatattgttcataaccttttgaaaccgataattatcgctcttcacac 32716772  T
Q  509 aaatagaaagagagaaagaaaccctatctaggttgttctccgcgtcgttgaatttgaagagag 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716773 aaatagaaagagagaaagaaaccctatctaggttgttctccgcgtcgttgaatttgaagagag 32716835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 10919437 - 10919383
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| ||| |||||||||||||  |||||||||||||||    
T  10919437 cctctcatctctcattttaatagtgctctcatttgatacaccctctatatatata 10919383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 2070822 - 2070776
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  2070822 ctctcattttaaaagtcttctcacttgatatgccctctatatatata 2070776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 2071485 - 2071531
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  2071485 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 2071531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 23817642 - 23817588
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| ||||||||||    
T  23817642 cctctcatctctcattttaatagtgctctcatttgatacaccctatatatatata 23817588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 13505360 - 13505307
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  13505360 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 13505307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 19139620 - 19139673
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  19139620 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 19139673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 4433962 - 4433916
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  4433962 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 4433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 13649407 - 13649357
Alignment:
Q  368 tcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  13649407 tcatctctcattttaacactcctctcatttgatacaccctatatatatata 13649357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 19790875 - 19790829
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | |||||||| |||||||||||| ||||||||||    
T  19790875 ctctcattttaaaactcctctcacttgatatgccctatatatatata 19790829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 25665757 - 25665711
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  25665757 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 25665711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 25670658 - 25670704
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  25670658 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 25670704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 50546071 - 50546117
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||||    
T  50546071 ctctcattttaaaagtcctcttacttgatatgccctatatatatata 50546117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 15601451 - 15601524
Alignment:
Q  343 atccaatggctagcatttagtcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatat 415  Q
    |||||| |||||  ||||| |||||||||| |||||||| || || ||||||| |||||||||||||| |||||    
T  15601451 atccaagggctattatttactcctctcatcctctcatttaaaaagccctctcacttgatatgccctctgtatat 15601524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 4929851 - 4929803
Alignment:
Q  365 ctctcatctctcattttaaga-gtcctctcatttgatatgccctctata 412  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||    
T  4929851 ctctcatctctcattataagatgtcctctcacttgatatgtcctctata 4929803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 22914697 - 22914749
Alignment:
Q  366 tctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||| | |||||||| ||||||  |||| ||||||||||    
T  22914697 tctcatctctcattttaaaactcctctcacttgatacaccctatatatatata 22914749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 36682270 - 36682326
Alignment:
Q  363 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||| | ||| |  ||||||||||||||||||||| ||||||||||    
T  36682270 tcctctcatctctcactataacaactcctctcatttgatatgccctatatatatata 36682326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 51097558 - 51097502
Alignment:
Q  363 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||| |||  | |||||||| |||||||| ||||||||||||||    
T  51097558 tcctctcatctctcattataactactcctctcacttgatatgtcctctatatatata 51097502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 29344604 - 29344703
Alignment:
Q  319 aaccgttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||  |||| |||| ||||| |||||||||  ||||||| |||||||||||| || ||| ||| |||| ||||||||||||||||||    
T  29344604 aaccgttgatattaatttaatttaatctaatggttagcatttaaccctctcacctctcattttaaaagccctttcacttgaaatgccctctatatatata 29344703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 22046476 - 22046415
Alignment:
Q  358 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  22046476 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 22046415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 22058884 - 22058823
Alignment:
Q  358 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  22058884 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 22058823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 32260173 - 32260137
Alignment:
Q  382 aagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||||| ||||||||||||||    
T  32260173 aagagtcctctcatttgatatggcctctatatatata 32260137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 15997548 - 15997594
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| || | ||||||||||||| ||||||||||||||||||    
T  15997548 ctctcatttaaaaactcctctcatttgaaatgccctctatatatata 15997594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 30321350 - 30321294
Alignment:
Q  363 tcctctcatctctcattttaag--agtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||| |||  | |||||||| |||||||||||||||||||||||    
T  30321350 tcctctcatctctcattt-aagttactcctctcacttgatatgccctctatatatata 30321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 1859791 - 1859852
Alignment:
Q  358 tttagtcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 418  Q
    |||| ||||||||||||||||||||| | ||||||||| |||||||| |  |||||||||||    
T  1859791 tttattcctctcatctctcattttaaaatgtcctctcacttgatatgtctactatatatata 1859852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 18970658 - 18970715
Alignment:
Q  363 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctc-tatatatata 418  Q
    |||||||||| ||||||||||| |||||||| |||||| |||||||| ||||||||||    
T  18970658 tcctctcatcctctcattttaaaagtcctcttatttgaaatgccctcatatatatata 18970715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 22047206 - 22047267
Alignment:
Q  358 tttagtcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 418  Q
    |||| |||||||||||||||||||||  | |||||||| |||||||| ||| ||||||||||    
T  22047206 tttattcctctcatctctcattttaacaattcctctcacttgatatgtcctatatatatata 22047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 7588197 - 7588233
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgata 401  Q
    ||||||||||||||||||| | |||||||||||||||    
T  7588197 ctctcatctctcattttaaaactcctctcatttgata 7588233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 18861975 - 18861880
Alignment:
Q  323 gttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||| |||| |||| ||||| |||||||||  ||||||| |||||||||||| |||||||||| |||| ||||| | ||||||||||    
T  18861975 gttgatattaatctaatttaatctaatggttagcatttaaccctctcacctctcattttaaaagtcctctcacttgaaatgccatatatatatata 18861880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 17105426 - 17105364
Alignment:
Q  346 caatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctc 408  Q
    |||||| ||| |||||  |||||||||| |||||||||||||||||||||||||||| |||||    
T  17105426 caatggttaggatttaaccctctcatctttcattttaagagtcctctcatttgatattccctc 17105364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 33574039 - 33574085
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  33574039 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 33574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 35424301 - 35424255
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||    
T  35424301 ctctcattttaaaagtcctctcatttgaaatgccctcaatatatata 35424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 12255177 - 12255123
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||| | ||| |||||||||||||||||  |||| ||||||||||    
T  12255177 cctctcatctctcactataaaagtcctctcatttgatacaccctatatatatata 12255123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 24872617 - 24872670
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||| |||||||| |||  ||||||||||||||||  |||||||||||||||    
T  24872617 ctctcacctctcattataaatgtcctctcatttgatacaccctctatatatata 24872670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 25746785 - 25746838
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| | |||||||||||||||   || |||||||||||    
T  25746785 ctctcatctctcattttaaaactcctctcatttgatacatcccctatatatata 25746838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 17277760 - 17277816
Alignment:
Q  363 tcctctcat-ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| |||||||| ||| | |||||||||||||||  |||||||||||||||    
T  17277760 tcctctcattctctcattataacactcctctcatttgatacaccctctatatatata 17277816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 22778290 - 22778234
Alignment:
Q  363 tcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||| ||||| ||||||||| |||||||| | | ||||||||||    
T  22778290 tcctctcatctctcattataagatgtcctctcacttgatatgacatatatatatata 22778234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 27365638 - 27365694
Alignment:
Q  363 tcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||| ||| | ||||||||| ||||||  |||||||||||||||    
T  27365638 tcctctcatctctcattataaaatgtcctctcacttgatacaccctctatatatata 27365694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 29881666 - 29881567
Alignment:
Q  319 aaccgttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||| |||| |||| ||||| ||||||||| ||||| || |||| ||||||| || ||||||| |||| ||||||| ||||||||||    
T  29881666 aaccgttgatattaatctaatttaatctaatggttagcatttaatcctcccacctcttattttaaaagccctctcacttgaaatgccctatatatatata 29881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 56295278 - 56295223
Alignment:
Q  364 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| || |||||||| |||||||||||| ||||||||||    
T  56295278 cctctcatctctcattttaaaaggtcctctcacttgatatgccctatatatatata 56295223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 1865541 - 1865487
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| ||||||||||    
T  1865541 cctctcatctctcattttaacagtgctctcatttgatacaccctatatatatata 1865487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 6050753 - 6050814
Alignment:
Q  357 atttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| |   ||| | ||||||||||||||||| ||||||||||||||    
T  6050753 atttagtcctctcatctcttaccataaaaatcctctcatttgatatgtcctctatatatata 6050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 11380321 - 11380268
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||| ||||||||||    
T  11380321 ctctcatctctcattataaaagtcctctcacttgatatgtcctatatatatata 11380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 55000629 - 55000684
Alignment:
Q  364 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| || |||| ||| |||||||||||| ||||||||||    
T  55000629 cctctcatctctcattttaaaaggtcctttcacttgatatgccctatatatatata 55000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 17736616 - 17736570
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  17736616 ctctcattttaaaactcctctcatttgaaatgtcctctatatatata 17736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 6049846 - 6049813
Alignment:
Q  385 agtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||| |||||||||||||||||||||||    
T  6049846 agtcctctcacttgatatgccctctatatatata 6049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 50182506 - 50182445
Alignment:
Q  357 atttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||| ||||||||||||||||||| | ||| |||||| |||||||| | | ||||||||||    
T  50182506 atttattcctctcatctctcattttgaaagtgctctcacttgatatgtcatatatatatata 50182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 50303374 - 50303427
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| | |||||||||||||||   || |||||||||||    
T  50303374 ctctcatctctcattttaaaactcctctcatttgatacatcccctatatatata 50303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 418
Target Start/End: Complemental strand, 56028679 - 56028651
Alignment:
Q  390 tctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||||||||||||    
T  56028679 tctcatttgatatgccctctatatatata 56028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 13913465 - 13913520
Alignment:
Q  364 cctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||    
T  13913465 cctctcatctctcattataagatgtcctctcacttgatatgccctatatatatata 13913520  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 418
Target Start/End: Complemental strand, 3322985 - 3322899
Alignment:
Q  333 atccaattcaatccaatggctagcatttagtcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 418  Q
    |||||||| ||||||||||||   |||||   ||||||||||||||||||| | ||||||||| |||||||||| | ||||||||||    
T  3322985 atccaatttaatccaatggctctaatttaactctctcatctctcattttaaaatgtcctctcacttgatatgccatatatatatata 3322899  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 44356863 - 44356802
Alignment:
Q  358 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  44356863 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 44356802  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 12332056 - 12332102
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  12332056 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 12332102  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 44357593 - 44357654
Alignment:
Q  358 tttagtcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 418  Q
    |||| |||||||||||||||||||||  | |||||||| |||||||| ||| ||||||||||    
T  44357593 tttattcctctcatctctcattttaacaattcctctcacttgatatgtcctatatatatata 44357654  T

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Target: scaffold1370 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 918 - 972
Alignment:
Q  364 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| | |||||||| ||||||  |||||||||||||||    
T  918 cctctcatctctcattttaaaattcctctcacttgatacaccctctatatatata 972  T

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Target: scaffold1370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 247 - 191
Alignment:
Q  363 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||    
T  247 tcctctcatcctctcatttaaaaagtcctctcatttgaaatgccctatatatatata 191  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 16723718 - 16723672
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  16723718 ctctcattttaaaagtcctctcatttgaaatgccctatatatatata 16723672  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 25229694 - 25229604
Alignment:
Q  319 aaccgttgatattaatccaattcaatccaatggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctct 409  Q
    ||||||||||||||||| |||| |||| ||||| |||||||||   |||||| |||||||||||| || | | ||| |||| |||||||||    
T  25229694 aaccgttgatattaatctaatttaatctaatggttagcatttaactctctcacctctcattttaaaagccatttcacttgaaatgccctct 25229604  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 36228549 - 36228494
Alignment:
Q  364 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||| || |||||| | |||||||||||| ||||||||||    
T  36228549 cctctcatctctcattttaaaaggtcctcttacttgatatgccctatatatatata 36228494  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 28540380 - 28540422
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatata 414  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||    
T  28540380 ctctcattttaaaagtcctctcatttgaaatgccctatatata 28540422  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 20105101 - 20105134
Alignment:
Q  385 agtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||| |||||||||||||||||||||||    
T  20105101 agtcctctcacttgatatgccctctatatatata 20105134  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 36698631 - 36698668
Alignment:
Q  363 tcctctcatctctcattttaaga-gtcctctcatttga 399  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36698631 tcctctcatctctcattttaagacgtcctctcatttga 36698668  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 19068500 - 19068454
Alignment:
Q  372 ctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  19068500 ctctcatttaaaaagtcctctcatttgaaatgccctctatatatata 19068454  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 41115489 - 41115549
Alignment:
Q  358 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatat 417  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| |||||||||    
T  41115489 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatat 41115549  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 418
Target Start/End: Complemental strand, 3772615 - 3772585
Alignment:
Q  388 cctctcatttgatatgccctctatatatata 418  Q
    |||||||||||||||||||||||||||||||    
T  3772615 cctctcatttgatatgccctctatatatata 3772585  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 138595 - 138542
Alignment:
Q  365 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  138595 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 138542  T

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Target: scaffold0285 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 17542 - 17598
Alignment:
Q  363 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatata 418  Q
    |||||||||| |||||||| || | ||||||||||||| ||||||||||||||||||    
T  17542 tcctctcatcctctcatttaaaaaatcctctcatttgaaatgccctctatatatata 17598  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 14946 - 15002
Alignment:
Q  363 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 418  Q
    ||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||    
T  14946 tcctctcatctctcattttaaaaggtgctctcacttgatatgccctatatatatata 15002  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 8441 - 8498
Alignment:
Q  361 agtcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatat 417  Q
    |||||||||||| |||||||| ||||||  ||||| |||| |||||||||||||||||    
T  8441 agtcctctcatcctctcatttaaagagtaatctcacttgaaatgccctctatatatat 8498  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 150629 - 150593
Alignment:
Q  363 tcctctcatctctcattttaagagtcctctcatttga 399  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  150629 tcctctcatctctcattttaaaagtcctctcacttga 150593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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