View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21180_low_3 (Length: 393)
Name: NF21180_low_3
Description: NF21180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21180_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 38326801 - 38326434
Alignment:
| Q |
11 |
atgaaactacagttaaatacaatagaaggttacaaaacattaacattgcaacaagattatcatattaaaagttctataattataaaacaattcaattaga |
110 |
Q |
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| T |
38326801 |
atgaaactacacttaaatacaatagaaggttacaaaacattaacattgcaacaagattatcatattaaaagttctataattataaaacaattcaattaga |
38326702 |
T |
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| Q |
111 |
caaactataaagataatatgatagagcaactagctactcaaactaaacattggttgcaacaagttggaaccattggctctgtggatcatcaagacaaaga |
210 |
Q |
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| T |
38326701 |
caaactataaagataatatgatagagcaactagttactcaaactaaacattggttgcaacaagttggaaccattggctctgtggatcatcaagacaaaga |
38326602 |
T |
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| Q |
211 |
gaatcatcatttatgcagatacattttgaagtcacaacaacagatgagttataatccttatgcaagcaaagatgtttcccattttgatccacagtagcca |
310 |
Q |
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| T |
38326601 |
gaatcatcatttatgcagatacattttgaagtcacaacaaaagatgagttataatccttatgcaagcaaagatgtttcccattttgatccacagtagcca |
38326502 |
T |
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| Q |
311 |
aatgaagtctcgaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcagaaatagct |
378 |
Q |
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| T |
38326501 |
aatgaagtctagaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcagaaatagct |
38326434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 146 - 373
Target Start/End: Complemental strand, 10766522 - 10766292
Alignment:
| Q |
146 |
actcaaactaaacattggttgcaacaagttggaaccattggctctgtggatcatcaagacaaagagaatcatcatttatgcagatacattttgaagtcac |
245 |
Q |
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| T |
10766522 |
actcaaactaaacattggtggcaacaagttgaaaccattggctctgaggatcatcaagacaaagagaatcatcatgtatgcagatacattttgaagtcac |
10766423 |
T |
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| Q |
246 |
aacaacagatgagttataatccttatgcaagcaaa---gatgtttcccattttgatccacagtagccaaatgaagtctcgaaagtgattcagatttccat |
342 |
Q |
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|||| ||||||| ||| |||||| |||||||||| | ||||| |||| ||||| |||||||||||||||||| | ||| ||||| ||| ||||||| |
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| T |
10766422 |
aacagcagatgaattagtatccttttgcaagcaaagttgttgtttgccatcttgattaacagtagccaaatgaagtttagaaggtgatgcagttttccat |
10766323 |
T |
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| Q |
343 |
gaactgttcttgttttcgtaatcatcagaaa |
373 |
Q |
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| T |
10766322 |
gaactattcttgctttcgcaatcatcagaaa |
10766292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 171 - 353
Target Start/End: Complemental strand, 2105643 - 2105455
Alignment:
| Q |
171 |
aagttggaaccattggctctgtggatcatcaagacaaagagaatcatc----atttatgcagatacattttgaagtcacaacaacagatgagttataatc |
266 |
Q |
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| T |
2105643 |
aagttggaaccattggctctatggatcatcaagaca--gagaatcatccatcattaatgcagatacattttgtagttacaacagcagatgagttggaatc |
2105546 |
T |
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| Q |
267 |
cttatgcaagcaaa-gatgtttcccattttgatccacagtagccaaatgaagtctc---gaaagtgattcagatttccatgaactgttctt |
353 |
Q |
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| T |
2105545 |
cttatgcaagtaaaagttgtttcccgttttgattcatagtagccaaatgaagaagcatagaaagtgatacagatttccattaattgttctt |
2105455 |
T |
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