View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_high_1 (Length: 703)
Name: NF21181_high_1
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 17 - 687
Target Start/End: Original strand, 35448543 - 35449213
Alignment:
| Q |
17 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaaatgtttagaaaatccataactgcttcattgtcaga |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35448543 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaagtgtttagaaaatccataactgcttcattgtcaga |
35448642 |
T |
|
| Q |
117 |
atctgagttggactcgacaccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
216 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448643 |
atctgagttggactcgataccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
35448742 |
T |
|
| Q |
217 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448743 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
35448842 |
T |
|
| Q |
317 |
cgtgagcagacatctcaaccatacgaaatgatgatccaccattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacatt |
416 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448843 |
cgtgagcagacatctcaaccatatgaaatgatgatccaccattactatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacatt |
35448942 |
T |
|
| Q |
417 |
ttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448943 |
ttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttc |
35449042 |
T |
|
| Q |
517 |
tgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtat |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449043 |
tgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtat |
35449142 |
T |
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| Q |
617 |
tgccgacaattgggcaggcctccaggacattttcatcagtaccaaacatgcgagtagaagaacttggatat |
687 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35449143 |
tgccgacaattgggcaggcctccaggacattttcatcaataccaaacatgcgagtagaagaacttggatat |
35449213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 582
Target Start/End: Original strand, 35448891 - 35449339
Alignment:
| Q |
140 |
agattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaa---cttgaatattcaggttg |
236 |
Q |
| |
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|||||||||||||||| |||| | |||| ||| || |||||||| | ||||| |||| ||||| ||||| |||| || |||| ||||||||||| |
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| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
|
| Q |
237 |
tactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaacc |
336 |
Q |
| |
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| |||||||||| |||||||| |||||| || ||| ||||||| ||||||||||||| |||||||||| ||| |||||| ||||||||||| |||||| |
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| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
|
| Q |
337 |
atacgaaatgatgatcca---ccattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaaca |
433 |
Q |
| |
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|||||||||| ||||||| || |||||| |||||||| ||||||||| ||| | |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
35449091 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcaataccaaaca |
35449190 |
T |
|
| Q |
434 |
tgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgct |
533 |
Q |
| |
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||| || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
35449191 |
tgcgagtagaagaacttggatattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggt |
35449290 |
T |
|
| Q |
534 |
tgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatcca |
582 |
Q |
| |
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|||| ||||||| |||||||||| |||||||||| ||| | ||||||| |
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| T |
35449291 |
tgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcca |
35449339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 419 - 581
Target Start/End: Original strand, 35440925 - 35441087
Alignment:
| Q |
419 |
catcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctg |
518 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| || ||||||| | ||||| ||| |||||||||| ||||||||| | ||||||||| |||||||| |
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| T |
35440925 |
catcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagttctg |
35441024 |
T |
|
| Q |
519 |
actataatgcatgcttgaaaaatctccatgagcagacatatcaaccatacgaaatggtgatcc |
581 |
Q |
| |
|
| || || |||||||| || |||||||||||||||| |||||||||||| ||||| |||||| |
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| T |
35441025 |
agtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 353
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
190 |
tttctatcagcaccagacatgtgagga---aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagt |
286 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |||| | |||||||||||| |
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| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
|
| Q |
287 |
tctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
353 |
Q |
| |
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||||| || | ||||||| ||||||||| ||||||||| | |||||||||| |||||||||||| |
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| T |
35441021 |
tctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 35449239 - 35449347
Alignment:
| Q |
254 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
353 |
Q |
| |
|
|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| |||||||||| ||| |||||||| |
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|
| T |
35449239 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcc |
35449338 |
T |
|
| Q |
354 |
accattatt |
362 |
Q |
| |
|
||||||||| |
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|
| T |
35449339 |
accattatt |
35449347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 560
Target Start/End: Original strand, 35440702 - 35440850
Alignment:
| Q |
412 |
acattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcg |
511 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||||| |||||| |||| |||||| || | || |||||| ||||| ||||||||||| | ||||||||| | |
|
|
| T |
35440702 |
acatttccatgagcaccaaacatgtgaggagaataacttgaatatccaggttttgatgtgttcatcccaccattgattccttgttgcacacccatgtttg |
35440801 |
T |
|
| Q |
512 |
agttctgactataatgcatgcttgaaaaatctccatgagcagacatatc |
560 |
Q |
| |
|
||| ||| ||||| |||||||| || |||||| ||| || ||||||| |
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|
| T |
35440802 |
tgttatgagtataagccatgcttggaatatctccttgaacaaacatatc |
35440850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 574
Target Start/End: Original strand, 35454520 - 35454565
Alignment:
| Q |
529 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
574 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||| |
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|
| T |
35454520 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
35454565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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