View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_high_13 (Length: 289)
Name: NF21181_high_13
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 32844851 - 32844586
Alignment:
| Q |
8 |
gagatgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccaca |
107 |
Q |
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| T |
32844851 |
gagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccagcaaaacaatacttgcaaacatacacaacgctgaaagccaca |
32844752 |
T |
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| Q |
108 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
207 |
Q |
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| T |
32844751 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
32844652 |
T |
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| Q |
208 |
ttggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgattt |
273 |
Q |
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| T |
32844651 |
ttggcgggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgattt |
32844586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 27745171 - 27744924
Alignment:
| Q |
8 |
gagatgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccaca |
107 |
Q |
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|||| |||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| ||||| ||||||||||||| |||||| | ||||||||||||| |
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| T |
27745171 |
gagacgaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaaagcaatacttgcaaagatacacaatgctgaaagccaca |
27745072 |
T |
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| Q |
108 |
aagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagaca |
207 |
Q |
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| T |
27745071 |
aagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttagattctgataaagaca |
27744972 |
T |
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| Q |
208 |
ttggcgggatgagaaactatcaacaatggaatattattggttttcaag |
255 |
Q |
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||| || ||||||||||||||||||||| | ||||||||||||||| |
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| T |
27744971 |
ttgtcgaattgagaaactatcaacaatggactgttattggttttcaag |
27744924 |
T |
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