View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_high_3 (Length: 470)
Name: NF21181_high_3
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 6798466 - 6798307
Alignment:
| Q |
64 |
tgttgtgagaatagaaagaattgtggtcctaagcacacatccacatcctctcaactctcttttacgtaacataattaacttaaattttcactctaattaa |
163 |
Q |
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| T |
6798466 |
tgttgtgagaataggaagaattgtggtcctaagcacacatctagaacctctccactctcttttatgtaacataa----cttaaattttcactctaattaa |
6798371 |
T |
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| Q |
164 |
ttatgcttcacatatgtaatcttgcataattagagaattagactaataataattgcactaccac |
227 |
Q |
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| T |
6798370 |
ttatccttcacatatgtaatcttgcataattagagaattggactaataataattgcaccaccac |
6798307 |
T |
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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 316
Target Start/End: Complemental strand, 21239690 - 21239556
Alignment:
| Q |
170 |
ttcacatatgtaatcttgcataattagagaattagactaataataattgcactaccacagtactacaatctttaattagctaatagaattaatgtttatg |
269 |
Q |
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| T |
21239690 |
ttcacttatgtaatcttgcataattagagaattggactaataataatttcactacc--------atcatctttaattagcttatag----aatgtctatg |
21239603 |
T |
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| Q |
270 |
ataaaacaaatatattctatcttctacatgataaatttacatcacat |
316 |
Q |
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| T |
21239602 |
ataaaactaatatatcctatccactacatgataattttacatcacat |
21239556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 48992286 - 48992376
Alignment:
| Q |
139 |
taacttaaattttcactctaattaattatgcttcacatatgtaatcttgcataatt--agagaattagactaataataattgcactaccac |
227 |
Q |
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| T |
48992286 |
taacttaaattttcattctaattaactatccttcacatatgtaatattgcataattaaaaagaattgtactaataataattgcactaccac |
48992376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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