View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21181_high_5 (Length: 392)

Name: NF21181_high_5
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21181_high_5
NF21181_high_5
[»] chr5 (18 HSPs)
chr5 (18-383)||(37232851-37233216)
chr5 (22-164)||(42076085-42076228)
chr5 (18-173)||(17037572-17037728)
chr5 (80-175)||(40401987-40402082)
chr5 (57-173)||(5079019-5079135)
chr5 (103-173)||(9333562-9333632)
chr5 (78-169)||(19985028-19985119)
chr5 (103-173)||(9354390-9354460)
chr5 (82-170)||(7410856-7410944)
chr5 (62-173)||(23679470-23679581)
chr5 (62-173)||(23855230-23855341)
chr5 (86-164)||(10869475-10869552)
chr5 (29-98)||(18191824-18191895)
chr5 (86-173)||(30786296-30786383)
chr5 (110-173)||(31068971-31069033)
chr5 (22-77)||(40389981-40390036)
chr5 (78-173)||(12042152-12042248)
chr5 (139-173)||(18191886-18191920)
[»] chr2 (13 HSPs)
chr2 (62-175)||(11017484-11017597)
chr2 (31-173)||(41573422-41573564)
chr2 (18-173)||(30267032-30267188)
chr2 (57-173)||(31342671-31342787)
chr2 (62-164)||(24479190-24479292)
chr2 (72-173)||(7718214-7718315)
chr2 (18-170)||(44920989-44921142)
chr2 (62-170)||(7702461-7702569)
chr2 (77-173)||(15513696-15513792)
chr2 (42-173)||(26734777-26734907)
chr2 (62-169)||(40016624-40016732)
chr2 (68-163)||(22966564-22966659)
chr2 (57-164)||(15540253-15540360)
[»] chr3 (16 HSPs)
chr3 (30-173)||(26707888-26708031)
chr3 (30-155)||(26735681-26735806)
chr3 (85-173)||(16457314-16457402)
chr3 (62-173)||(2943174-2943285)
chr3 (62-173)||(1627907-1628018)
chr3 (70-173)||(7407722-7407825)
chr3 (70-173)||(13846021-13846124)
chr3 (62-170)||(9633402-9633510)
chr3 (82-173)||(2550195-2550286)
chr3 (67-162)||(36035329-36035424)
chr3 (68-170)||(27713405-27713507)
chr3 (70-173)||(1654605-1654708)
chr3 (68-173)||(5498507-5498611)
chr3 (97-173)||(1613208-1613284)
chr3 (131-169)||(27259474-27259512)
chr3 (62-134)||(28745043-28745115)
[»] chr4 (14 HSPs)
chr4 (18-116)||(48465459-48465557)
chr4 (26-173)||(24558918-24559066)
chr4 (18-173)||(1152073-1152229)
chr4 (18-173)||(1684867-1685023)
chr4 (25-155)||(21317485-21317612)
chr4 (18-173)||(47065949-47066105)
chr4 (70-173)||(43600296-43600399)
chr4 (70-173)||(53300380-53300483)
chr4 (77-170)||(37750965-37751058)
chr4 (77-169)||(21539247-21539338)
chr4 (106-173)||(4881073-4881140)
chr4 (124-175)||(48464067-48464118)
chr4 (106-171)||(4904144-4904209)
chr4 (42-171)||(45641682-45641810)
[»] chr8 (20 HSPs)
chr8 (25-173)||(6403622-6403768)
chr8 (18-173)||(19369825-19369981)
chr8 (18-173)||(19448477-19448633)
chr8 (18-173)||(19532443-19532599)
chr8 (25-173)||(31347378-31347525)
chr8 (62-170)||(6801790-6801898)
chr8 (70-173)||(45356080-45356183)
chr8 (18-173)||(25637673-25637828)
chr8 (25-164)||(5000717-5000856)
chr8 (62-173)||(5528772-5528883)
chr8 (82-173)||(28249055-28249146)
chr8 (70-173)||(17634439-17634542)
chr8 (70-173)||(25638836-25638939)
chr8 (103-173)||(29553658-29553728)
chr8 (62-169)||(6223434-6223541)
chr8 (68-173)||(5650911-5651016)
chr8 (78-173)||(29345460-29345556)
chr8 (78-173)||(18766946-18767041)
chr8 (62-173)||(14997650-14997761)
chr8 (76-164)||(31369080-31369168)
[»] chr6 (18 HSPs)
chr6 (30-162)||(4485493-4485625)
chr6 (31-173)||(23264425-23264567)
chr6 (18-173)||(12591862-12592018)
chr6 (18-173)||(14669261-14669417)
chr6 (70-173)||(16734834-16734937)
chr6 (57-173)||(15361744-15361860)
chr6 (18-173)||(17719638-17719794)
chr6 (77-173)||(6684123-6684218)
chr6 (21-173)||(34374854-34375011)
chr6 (70-173)||(11936735-11936838)
chr6 (70-173)||(11948715-11948818)
chr6 (86-174)||(29667899-29667987)
chr6 (71-173)||(9631123-9631226)
chr6 (25-164)||(10070693-10070832)
chr6 (123-173)||(23904373-23904423)
chr6 (100-164)||(2941044-2941108)
chr6 (89-164)||(7601321-7601395)
chr6 (123-171)||(10935802-10935850)
[»] chr1 (12 HSPs)
chr1 (18-173)||(12189981-12190135)
chr1 (25-173)||(51758782-51758931)
chr1 (84-171)||(3399653-3399740)
chr1 (77-173)||(28636932-28637028)
chr1 (62-173)||(39368599-39368711)
chr1 (100-173)||(16222807-16222880)
chr1 (62-173)||(897484-897594)
chr1 (70-173)||(1843981-1844084)
chr1 (106-173)||(13208641-13208708)
chr1 (123-173)||(5911685-5911735)
chr1 (114-173)||(15214356-15214415)
chr1 (123-173)||(15204623-15204673)
[»] scaffold0069 (1 HSPs)
scaffold0069 (18-173)||(40613-40769)
[»] chr7 (14 HSPs)
chr7 (20-173)||(9242401-9242555)
chr7 (30-150)||(26701083-26701201)
chr7 (70-173)||(4685371-4685474)
chr7 (62-173)||(26621051-26621162)
chr7 (78-173)||(30089764-30089859)
chr7 (62-175)||(3234354-3234467)
chr7 (78-164)||(16086525-16086611)
chr7 (62-170)||(10022156-10022264)
chr7 (77-173)||(26608514-26608610)
chr7 (70-159)||(20277328-20277417)
chr7 (85-173)||(26224961-26225049)
chr7 (70-174)||(27135957-27136061)
chr7 (82-173)||(26205395-26205486)
chr7 (123-164)||(16170309-16170350)
[»] scaffold0576 (1 HSPs)
scaffold0576 (57-173)||(6728-6844)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-164)||(446211-446345)
[»] scaffold0684 (1 HSPs)
scaffold0684 (18-173)||(662-818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (31-78)||(8845-8892)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 37233216 - 37232851
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233216 actagtaatacaaaaagtgttacgaaaatataaatatgaaatagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacg 37233117  T
Q  118 gactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctttagatctaaattatgttgtagtgtcgttagatacgaataattga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||||||||    
T  37233116 gactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctttagatctcaattatcttgtagtgtcgttagttacaaataattga 37233017  T
Q  218 ttagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatcttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233016 ttagtagtaagaataaggtggatttatcatggtaatattctttaaacgcaaacggggaaagatgctatatccttcgaaagaaactaaggaacggatcttt 37232917  T
Q  318 gatttcaaaactgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232916 gatttcaaaactgcaaattagatatgatagcaatcaaccacataaaaagaaagggcagaattcatc 37232851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 42076228 - 42076085
Alignment:
Q  22 gtaatacaaaaagtgttacgaaaa-tataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggac 120  Q
    ||||||||||||||||||  |||| |||||||||| |||| |||||||||||||| |||||||||||||||| || ||||| ||||||||||||| ||||    
T  42076228 gtaatacaaaaagtgttaaaaaaaatataaatatgtaacaatttttaaatgttaccgataatactataaaatattcctgaagctttttagtaacatggac 42076129  T
Q  121 tatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    | || |||||||||| ||||||||||||||||||||||||||||    
T  42076128 tttatctaacaattgttcaaatgttactaaatttaattagtaac 42076085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 17037728 - 17037572
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||||||    
T  17037728 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacac 17037629  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
     |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  17037628 tgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttctt 17037572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 40401987 - 40402082
Alignment:
Q  80 aatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 175  Q
    |||||||||||||||| ||||| |||||||| ||||| |||| ||||||||||||| ||||| || ||||||||||||||||||| ||||||||||    
T  40401987 aatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttcttta 40402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 5079019 - 5079135
Alignment:
Q  57 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 156  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| ||||||||||    
T  5079019 aacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaa 5079118  T
Q  157 ttagtaacttttttctt 173  Q
    |||||||| ||||||||    
T  5079119 ttagtaacatttttctt 5079135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 9333562 - 9333632
Alignment:
Q  103 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9333562 ctttttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 9333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 19985119 - 19985028
Alignment:
Q  78 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    ||||||||||||||||| ||| ||||| |||||||||  ||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  19985119 ataatactataaaatgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacatttt 19985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 9354390 - 9354460
Alignment:
Q  103 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9354390 ctttttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttctt 9354460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 7410944 - 7410856
Alignment:
Q  82 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 170  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  7410944 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttt 7410856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 23679581 - 23679470
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |    
T  23679581 tttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaat 23679482  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  23679481 aacatttttctt 23679470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 23855230 - 23855341
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||| ||| || |||| ||||| || |||||| | ||||||||||| |    
T  23855230 tttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaat 23855329  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  23855330 aacatttttctt 23855341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 10869552 - 10869475
Alignment:
Q  86 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    ||||| |||||| | |||| |||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  10869552 ataaagtgttaccgtaactctttagtaagaggga-tatacctaacaattgttcaaatgttactaaatttaattagtaac 10869475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 18191824 - 18191895
Alignment:
Q  29 aaaaagtgttacgaaaatat--aaatatgaaacagtttttaaatgttactgataatactataaaatgttact 98  Q
    |||||||||||| |||||||  ||||||| |||| ||||||| |||||||||||||||||| ||||||||||    
T  18191824 aaaaagtgttacaaaaatatataaatatgtaacaatttttaactgttactgataatactattaaatgttact 18191895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 30786383 - 30786296
Alignment:
Q  86 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||| ||| || ||||||||||||| ||  | ||||||||||||  ||||||||||||||||| ||| |||||| ||||||||    
T  30786383 ataaaatgtgactaaatctttttagtaacaaggcatttacctaacaattattcaaatgttactaaattgaatcagtaacatttttctt 30786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 31068971 - 31069033
Alignment:
Q  110 gtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  31068971 gtaacacgggctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttctt 31069033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40389981 - 40390036
Alignment:
Q  22 gtaatacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactg 77  Q
    |||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||    
T  40389981 gtaatacaaaaaatgttacaaaaatataaatatgtaacagtttttgaatgttactg 40390036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 12042152 - 12042248
Alignment:
Q  78 ataatactataaaatgttactgaaactttttagtaacacgga-ctatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||| |||||||||| ||| ||||| |||||||| | |   || ||||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  12042152 ataataatataaaatgtaactaaaactctttagtaataggtttctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttctt 12042248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 18191886 - 18191920
Alignment:
Q  139 aaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||||||||||||||| ||||||||    
T  18191886 aaatgttactaaatttaattagtaacatttttctt 18191920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 11017597 - 11017484
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  11017597 tttttaaatgttactgataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagt 11017498  T
Q  162 aacttttttcttta 175  Q
    |||  |||||||||    
T  11017497 aacaattttcttta 11017484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 41573564 - 41573422
Alignment:
Q  31 aaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaac 130  Q
    |||||||||| |||||| ||| | | |||| ||| ||||||||||| ||||||||||||||||||| ||||    |||||||||||||  | ||||||||    
T  41573564 aaagtgttacaaaaatacaaaaaagcaacattttctaaatgttactaataatactataaaatgttattgaagtaatttagtaacacggggtttacctaac 41573465  T
Q  131 aattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| | || ||||||||||||||||||||||| ||||||||    
T  41573464 aattgtttaactgttactaaatttaattagtaacatttttctt 41573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 30267188 - 30267032
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | | | ||| || ||  ||| ||||| | |||||| |||| ||||||||||||| ||| ||||| ||| |||||||    
T  30267188 actagttatacaaaaagtgttacaatagtgtaacatttgcgacactttttgattgttacggatagtactataaaatgtaactaaaactctttggtaacac 30267089  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    || || ||||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  30267088 gggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttctt 30267032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 31342671 - 31342787
Alignment:
Q  57 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 156  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| ||||||||||    
T  31342671 aacactttttgattgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaa 31342770  T
Q  157 ttagtaacttttttctt 173  Q
    |||||||| ||||||||    
T  31342771 ttagtaacatttttctt 31342787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 24479292 - 24479190
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| |||||||  |||||||||||||||| | ||| || || ||||||||||||  || ||||||| ||||| |||||||||||||||||||||||||    
T  24479292 tttttgaatgttatagataatactataaaatataactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagt 24479193  T
Q  162 aac 164  Q
    |||    
T  24479192 aac 24479190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 7718315 - 7718214
Alignment:
Q  72 ttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 171  Q
    |||| |||| ||||||||||||| | | ||||| |||||||||||||||| || |||||||||| |||  ||||||||||||||||||||||  ||||||    
T  7718315 ttacggatagtactataaaatgtaattaaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttc 7718216  T
Q  172 tt 173  Q
    ||    
T  7718215 tt 7718214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 44921142 - 44920989
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | | | ||| || ||  ||| ||||| | |||||| |||| ||||||||||||| ||| ||||| |||||||||||    
T  44921142 actagtgatacaaaaagtgttacaatagtgtaacatttgcgacatttttttattgttacggatagtactataaaatgtaactaaaactctttagtaacac 44921043  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 170  Q
    |  || ||||||||||||| | |  ||||||||||||||||||||||| |||||    
T  44921042 gagctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt 44920989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 7702569 - 7702461
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    |||||||||||||| |||||||||| ||||||| ||| || || |||||||| | || || |||||||||||||  ||||||||||||| |||||||| |    
T  7702569 tttttaaatgttacagataatactacaaaatgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaat 7702470  T
Q  162 aactttttt 170  Q
    ||| |||||    
T  7702469 aacattttt 7702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 15513792 - 15513696
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||| ||||||||||||| ||| || |||||||||||||||  || ||||||||||||| |||| |||||| |||||||| ||||||| ||||||||    
T  15513792 gatagtactataaaatgtaactaaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttctt 15513696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 26734907 - 26734777
Alignment:
Q  42 aaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaa 141  Q
    |||||||||||| | |||| |||| || |||||||||||||| | ||||||| |||| || || |||| ||| | ||||| ||||||||||||  |||||    
T  26734907 aaaatataaataagtaacaattttgaa-tgttactgataatattgtaaaatgatactaaagctctttaataatatggactttacctaacaattattcaaa 26734809  T
Q  142 tgttactaaatttaattagtaacttttttctt 173  Q
    | || ||||||||||||| ||| |||||||||    
T  26734808 tattgctaaatttaattaataagttttttctt 26734777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 40016732 - 40016624
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaa-ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattag 160  Q
    ||||| |||||||| |||||||| ||||||||| | | ||| || |||||||| | || || ||||||||||||  ||||||||||||||||||||| ||    
T  40016732 tttttgaatgttacagataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcag 40016633  T
Q  161 taacttttt 169  Q
    |||| ||||    
T  40016632 taacatttt 40016624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 22966659 - 22966564
Alignment:
Q  68 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaa 163  Q
    |||||||| ||||||||| |||||||| ||| ||  | |||||||||| || || ||||||||||||| | |||||| ||||||||| ||||||||    
T  22966659 aatgttacagataatactctaaaatgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaa 22966564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 15540253 - 15540360
Alignment:
Q  57 aacagtttttaaatgttactgataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaattta 155  Q
    |||| ||||||| ||||||| ||||||||| |||| ||||||||| ||  ||||||| |||  ||| |||||| |||||| | ||||||||||| || ||    
T  15540253 aacattttttaattgttactaataatactaaaaaaatgttactgataccgtttagtaccacaaactttacctatcaattgtt-aaatgttactagatata 15540351  T
Q  156 attagtaac 164  Q
    |||||||||    
T  15540352 attagtaac 15540360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 26708031 - 26707888
Alignment:
Q  30 aaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa 129  Q
    ||||||||||| ||||||| |||||  |||||||||| | ||||||||| |||||||| ||||||||||||| || ||||||||||  |||| |||||||    
T  26708031 aaaagtgttacaaaaatatgaatatacaacagttttttactgttactgagaatactatgaaatgttactgaacctctttagtaacagagactttacctaa 26707932  T
Q  130 caattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  26707931 caattgttcaaatgttactaaatttaattagtaacatttttctt 26707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 155
Target Start/End: Complemental strand, 26735806 - 26735681
Alignment:
Q  30 aaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa 129  Q
    ||||||||||| ||||||| |||||  |||||||||| ||||||||| |||||||||| |||||||| |||| || |||||||||| ||| | |||||||    
T  26735806 aaaagtgttacaaaaatatgaatatacaacagttttttaatgttactaataatactatgaaatgttattgaagctctttagtaacatggattttacctaa 26735707  T
Q  130 caattgctcaaatgttactaaattta 155  Q
    |||||| |||||||||||||||||||    
T  26735706 caattgttcaaatgttactaaattta 26735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 16457314 - 16457402
Alignment:
Q  85 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16457314 tataaaatgttactgaagctttttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 16457402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 2943174 - 2943285
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| |||||| |||||||||||||||||| ||| ||||  ||||||||||||| ||  |||||||||||| || ||||||||||||||||||||||    
T  2943174 tttttaattgttacagataatactataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagt 2943273  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  2943274 aacatttttctt 2943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 1627907 - 1628018
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| ||||||  ||||||||||||||||| ||| ||||| ||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||||||    
T  1627907 tttttaattgttacatataatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagt 1628006  T
Q  162 aacttttttctt 173  Q
    ||  ||||||||    
T  1628007 aatatttttctt 1628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 7407722 - 7407825
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    ||||||||||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||  ||||    
T  7407722 tgttactgatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttt 7407821  T
Q  170 tctt 173  Q
    ||||    
T  7407822 tctt 7407825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 13846124 - 13846021
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  13846124 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 13846025  T
Q  170 tctt 173  Q
    ||||    
T  13846024 tctt 13846021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 9633402 - 9633510
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| ||||||||  ||||| || |||||||| ||| ||||| |||||||||| || || ||||||||||||| | |||||| ||||||||||||||||    
T  9633402 tttttgaatgttacatataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagt 9633501  T
Q  162 aactttttt 170  Q
    ||| |||||    
T  9633502 aacattttt 9633510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 2550286 - 2550195
Alignment:
Q  82 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| ||| ||||  ||||||||||| | || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  2550286 tactataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 2550195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 36035424 - 36035329
Alignment:
Q  67 aaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagta 162  Q
    |||||||||  ||||||||||||||||| ||| || || ||||||||||||  || |||||||||||||  ||| |||||||||||||||||||||    
T  36035424 aaatgttacatataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagta 36035329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 27713405 - 27713507
Alignment:
Q  68 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 167  Q
    ||||||||| ||||||||||||||| || || ||||| ||||||||||  |  | | ||||||||||  | |||||||||||||||||||||||||||||    
T  27713405 aatgttactaataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaacttt 27713504  T
Q  168 ttt 170  Q
    |||    
T  27713505 ttt 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 1654708 - 1654605
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  |||| |||||| | || ||| ||||||||| |||| |||| |||||||||||||||||| ||||    
T  1654708 tgttacagatagtactataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttt 1654609  T
Q  170 tctt 173  Q
    ||||    
T  1654608 tctt 1654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 5498611 - 5498507
Alignment:
Q  68 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 167  Q
    ||||||||| ||||||| ||||||| ||||  ||||| ||||||||||  |  | ||||||||||||| ||| | |||||||||||||||||||||| ||    
T  5498611 aatgttactaataatac-ataaaatattaccaaaactctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatt 5498513  T
Q  168 tttctt 173  Q
    ||||||    
T  5498512 tttctt 5498507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 1613208 - 1613284
Alignment:
Q  97 ctgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || || ||||||| ||||| |||| |||||||||||||| |||||||| ||||||||    
T  1613208 ctgaagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttctt 1613284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 27259474 - 27259512
Alignment:
Q  131 aattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  27259474 aattgttcaaatgttactaaatttaattagtaacatttt 27259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 28745115 - 28745043
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaatt 134  Q
    ||||| ||||||||  |||||||| |||||||| ||| ||||| |||||||||| |  || ||||||||||||    
T  28745115 tttttgaatgttacaaataatactctaaaatgtaactaaaactctttagtaacatgtgctttacctaacaatt 28745043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48465557 - 48465459
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    ||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48465557 actagtaatacaaaaagtgttgcaaaaatataaatatgtaactgtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 48465459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 24558918 - 24559066
Alignment:
Q  26 tacaaaaagtgttacgaaaa-tataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactata 124  Q
    ||||||||||||| | |||| |||||| | | |||| ||| | ||||||||||||||||||||||||| | ||| ||| | ||||||||||| | |  ||    
T  24558918 tacaaaaagtgttccaaaaaatataaacaagtaacaatttatgaatgttactgataatactataaaatatcactaaaattctttagtaacacagccgtta 24559017  T
Q  125 cctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  24559018 cctaacaatcgttcaaatgttactaaatttaattagtaacatttttctt 24559066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 1152229 - 1152073
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||| ||| ||||||| |||||| ||||||| |||||| ||| ||| ||||| |||||||||||    
T  1152229 actagtgatacaaaaagtgttacaataatgtaacatttgagacactttttaattgttacagataatattataaactgtaactaaaactctttagtaacac 1152130  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| |  | |||| | |||||||||||||||| ||||||||    
T  1152129 ggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttctt 1152073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 1684867 - 1685023
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | | | ||| || ||  ||| ||||||| |||||| |||||||||||||| ||| ||| ||||| |||||||||||    
T  1684867 actagtgatacaaaaagtgttacaatattgtaacatttgcgacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacac 1684966  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  1684967 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 1685023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 21317612 - 21317485
Alignment:
Q  25 atacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactata 124  Q
    |||||||||||||||| ||||||||||   | |||| ||||| ||||||| || |||||| ||||||||||| |||| | |||||||||||| | || ||    
T  21317612 atacaaaaagtgttacaaaaatataaa---gtaacactttttgaatgttattggtaatacaataaaatgttagtgaagcattttagtaacacagccttta 21317516  T
Q  125 cctaacaattgctcaaatgttactaaattta 155  Q
    ||||||||||| | |||||||||||||||||    
T  21317515 cctaacaattgttgaaatgttactaaattta 21317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 47065949 - 47066105
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | | | ||| || ||  ||| ||||| | |||||| |||| ||||||||||||| ||| ||||| ||| |||||||    
T  47065949 actagttatacaaaaagtgttacaatagtgtaacatttgcgacactttttgattgttacggatagtactataaaatgtaactaaaactctttggtaacac 47066048  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    || || ||||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  47066049 gggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttctt 47066105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 43600399 - 43600296
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| | || |||||||||||||||||| ||||    
T  43600399 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttt 43600300  T
Q  170 tctt 173  Q
    ||||    
T  43600299 tctt 43600296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 53300483 - 53300380
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||| ||||||||| ||| ||||| ||| ||||||||| || ||||||||||||| | |  |||||||||||||||||| |||| ||||    
T  53300483 tgttacggatagtacgataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttt 53300384  T
Q  170 tctt 173  Q
    ||||    
T  53300383 tctt 53300380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 37750965 - 37751058
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaactttttt 170  Q
    |||||||||||||||||| ||| || ||| |||||||||  | || || ||||||||||| ||||||||||| | ||||||||||||| |||||    
T  37750965 gataatactataaaatgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt 37751058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 21539247 - 21539338
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||||||| ||||||| ||| || || |||||||||| ||||| || |||||||||| | ||||||||||||||||||| |||||| ||||    
T  21539247 gataatactaaaaaatgtaactaaatctctttagtaacaaggact-tatctaacaattgtttaaatgttactaaatttaatcagtaacatttt 21539338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 4881073 - 4881140
Alignment:
Q  106 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||||| ||||||||||||   ||||| |||||||||||||| |||||| ||||||||    
T  4881073 tttagtaacacggactttacctaacaattatacaaatattactaaatttaatcagtaacatttttctt 4881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 48464118 - 48464067
Alignment:
Q  124 acctaacaattgctcaaatgttactaaatttaattagtaacttttttcttta 175  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  48464118 acctaacaattgttcaaatgttactaaatttaattagtaacatttttattta 48464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 4904144 - 4904209
Alignment:
Q  106 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 171  Q
    |||||||||| |  || |||||||||||||  |||||||||||||||||||| |||||| ||||||    
T  4904144 tttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttc 4904209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 45641810 - 45641682
Alignment:
Q  42 aaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaa 141  Q
    ||||| |||||| | |||| ||||||||||||||| ||||| ||| ||||||||||| ||||| || | ||||||  ||  |  ||| ||||||  ||||    
T  45641810 aaaatgtaaataagtaacaatttttaaatgttactaataatgcta-aaaatgttactaaaactcttaaataacacacaccttcactagcaattgtgcaaa 45641712  T
Q  142 tgttactaaatttaattagtaacttttttc 171  Q
    |||||||| || ||||||||||| ||||||    
T  45641711 tgttactagatataattagtaacatttttc 45641682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 6403768 - 6403622
Alignment:
Q  25 atacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactata 124  Q
    ||||||||| |||||| |||||||||||||| |||| ||||| | ||||||  || ||  ||||||||||||||||| ||||||| |||||||| || ||    
T  6403768 atacaaaaaatgttac-aaaatataaatatgcaacatttttttactgttaca-attatgatataaaatgttactgaagctttttaataacacgggcttta 6403671  T
Q  125 cctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6403670 cctaacaattgctcaaatgttactaaatttaattagtaacatttttctt 6403622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 19369825 - 19369981
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||||||    
T  19369825 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacac 19369924  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19369925 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19369981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 19448633 - 19448477
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||||| | ||| ||||| |||||||||||    
T  19448633 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaaatataactaaaactctttagtaacac 19448534  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19448533 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19448477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 19532443 - 19532599
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||||| | ||| ||||| |||||||||||    
T  19532443 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaaatataactaaaactctttagtaacac 19532542  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | |||||||||||||||| ||||||||    
T  19532543 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttctt 19532599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 31347525 - 31347378
Alignment:
Q  25 atacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactata 124  Q
    |||||||||||||||| |||||||||||||| |||| ||||| | ||||||  |||||  |||||||||||||||||  |  |||||||||| |  | ||    
T  31347525 atacaaaaagtgttac-aaaatataaatatgtaacatttttttattgttacaaataatgatataaaatgttactgaagatggttagtaacacaggattta 31347427  T
Q  125 cctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
     |||||||||| |||||||||||||||||||||||||| | ||||||||    
T  31347426 tctaacaattgatcaaatgttactaaatttaattagtagcatttttctt 31347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 6801790 - 6801898
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| |||||||| | ||||||| |||||||| ||| ||||| |||||||||| || || ||||||||||||| |||| ||||||||||||||||||||    
T  6801790 ttttttaatgttacagctaatactctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagt 6801889  T
Q  162 aactttttt 170  Q
    ||| |||||    
T  6801890 aacattttt 6801898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 45356080 - 45356183
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  45356080 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 45356179  T
Q  170 tctt 173  Q
    ||||    
T  45356180 tctt 45356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 25637828 - 25637673
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||  || || |||| ||||||| ||||||  ||||||||||||||||| ||| ||| | |||||||||||    
T  25637828 actagtgatacaaaaagtgttacaataatgtagcatttgcaacactttttaattgttaca-ataatactataaaatgtaactaaaattctttagtaacac 25637730  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    || || ||||||||||||| || | |||| ||||||||||||||||||  |||||||    
T  25637729 gggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttctt 25637673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 5000856 - 5000717
Alignment:
Q  25 atacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactata 124  Q
    |||||||||||||||| ||| || ||||| | |||| ||||  | ||||||||||||||||||||  | |||||  | || ||||||||||| |  |  |    
T  5000856 atacaaaaagtgttaccaaagtacaaataagtaacatttttcgagtgttactgataatactataacgtcttactctagctctttagtaacacaggtttca 5000757  T
Q  125 cctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  5000756 cctaactattgctcaaatgttactaaatttaattagtaac 5000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 5528883 - 5528772
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| |||||| ||||||||| |||||||| ||| ||||| ||||||||||| |||| || |||||||||| |  | |||| |||||||||||||||    
T  5528883 tttttaactgttacagataatactgtaaaatgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagt 5528784  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  5528783 aacatttttctt 5528772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 28249055 - 28249146
Alignment:
Q  82 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| |||| |||| |||||||||||||||||| ||||||||    
T  28249055 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttctt 28249146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 17634439 - 17634542
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||  | ||||||||||||| || |||||| |||||| |||| ||||| ||||||||||||||||| ||||    
T  17634439 tgttacagatagtactataaaatgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttt 17634538  T
Q  170 tctt 173  Q
    ||||    
T  17634539 tctt 17634542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 25638939 - 25638836
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  |||||||||| ||  | ||||||||||||| |||| |||| |||||||||||||||||| ||||    
T  25638939 tgttacggatagtactataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttt 25638840  T
Q  170 tctt 173  Q
    ||||    
T  25638839 tctt 25638836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 29553728 - 29553658
Alignment:
Q  103 ctttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||||  || || |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29553728 ctttttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttctt 29553658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 6223541 - 6223434
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| ||||||||  |||||| |||||| ||| ||| ||||| ||||||||||||  || ||||||||||||   |||||||||||||||||||| |||    
T  6223541 tttttgaatgttacatataatattataaagtgtaactaaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagt 6223442  T
Q  162 aacttttt 169  Q
    ||| ||||    
T  6223441 aacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 5650911 - 5651016
Alignment:
Q  68 aatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttt 167  Q
    |||||||  |||||||| ||||||||  ||| || |||||| |||||| ||  | ||||||||||||| ||||||||| ||||||| |||||||||| ||    
T  5650911 aatgttatagataataccataaaatgcaactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatt 5651010  T
Q  168 tttctt 173  Q
    ||||||    
T  5651011 tttctt 5651016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 29345556 - 29345460
Alignment:
Q  78 ataatactataaaatgttactgaaactt-tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||||||| ||| ||  || |||||||| | || || ||||||||||||| ||||| |||||||||||||||||||||  ||||||||    
T  29345556 ataatactataaaatgtaactaaagtttgtttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttctt 29345460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 18767041 - 18766946
Alignment:
Q  78 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||||||| ||| ||||| |||||||||||| ||| ||||||||||||| |  | |||| | ||||||||||| |||  ||||||||    
T  18767041 ataatactataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttctt 18766946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 14997761 - 14997650
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| |||||||| | ||||||||||||| || ||| || || |||||||||| ||  | ||||||||||||   ||||||||||||| |||||  |||    
T  14997761 tttttgaatgttacagttaatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagt 14997662  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  14997661 aacatttttctt 14997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 31369080 - 31369168
Alignment:
Q  76 tgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    ||||||| ||||||||||| ||||||||| ||||||||||    || ||| ||||| ||| | |||||| |||||| ||||||||||||    
T  31369080 tgataatcctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaac 31369168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 4485493 - 4485625
Alignment:
Q  30 aaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa 129  Q
    ||||||||| | |||||||||||||| |||| ||||| ||||||||| ||||| ||||| | ||||||| ||||| |||| ||||||||||| |||||||    
T  4485493 aaaagtgttgcaaaaatataaatatgcaacatttttttaatgttactaataattctatagattgttactaaaactatttaataacacggactttacctaa 4485592  T
Q  130 caattgctcaaatgttactaaatttaattagta 162  Q
    |||||  |||||| |||||||||||||||||||    
T  4485593 caattattcaaatattactaaatttaattagta 4485625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 23264425 - 23264567
Alignment:
Q  31 aaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaac 130  Q
    |||||||||| |||||| ||||| | |||| ||||| | |||| |||||||||||||||| | || ||||| || |||||||||||||| | ||||||||    
T  23264425 aaagtgttacaaaaatacaaataagtaacatttttttagtgtttctgataatactataaagttttgctgaagctctttagtaacacggattttacctaac 23264524  T
Q  131 aattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||||||||||||||||||  |||||||    
T  23264525 aattgttcgaatgttactaaatttaattagtaacaattttctt 23264567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 12592018 - 12591862
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||| ||| ||| ||||| |||||||||||    
T  12592018 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacac 12591919  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    || || ||||||||||||| || |  ||||||||||||||||| |||| ||||||||    
T  12591918 gggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttctt 12591862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 14669261 - 14669417
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| ||||||  ||||||||||||||||| ||| ||||| |||||||||||    
T  14669261 actagtgatacaaaaagtgttacaataatgtaacatttgtgacactttttaattgttacaaataatactataaaatgtaactaaaactctttagtaacac 14669360  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| ||||||||||||  || | |||| | |||||||||||||||| ||||||||    
T  14669361 ggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttctt 14669417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 16734937 - 16734834
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  16734937 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttt 16734838  T
Q  170 tctt 173  Q
    ||||    
T  16734837 tctt 16734834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 15361860 - 15361744
Alignment:
Q  57 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 156  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| ||||||||||    
T  15361860 aacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaa 15361761  T
Q  157 ttagtaacttttttctt 173  Q
    |||||||| ||||||||    
T  15361760 ttagtaacatttttctt 15361744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 17719638 - 17719794
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||| |||||||||||||| ||| ||| ||||| |||||||||||    
T  17719638 actagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttacagataatactataaattgtaactaaaactctttagtaacac 17719737  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | ||| |||||||||||| ||||||||    
T  17719738 ggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttctt 17719794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 6684218 - 6684123
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||||||| ||| ||||| |||||||||| ||||| |||||||||| || || | ||||||||||||||||||||||| ||||||||    
T  6684218 gataatactataaaatgtaactaaaactctttagtaacatggactttacctaacaa-tgttcgagtgttactaaatttaattagtaacatttttctt 6684123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 34375011 - 34374854
Alignment:
Q  21 agtaatacaaaaagtgttacgaaaa---tataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacg 117  Q
    |||||||||||||||||||  ||||   |||||| | | |||| ||| | ||||||||| ||||||||||||||| ||||| ||||| |||||||||||     
T  34375011 agtaatacaaaaagtgttaaaaaaaatatataaacaagtaacactttatgaatgttactcataatactataaaatattactcaaactctttagtaacaca 34374912  T
Q  118 gactatacctaacaa--ttgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    || | | ||||||||  ||| ||||||||||| |||| ||||||||||| ||||||||    
T  34374911 gattttgcctaacaattttgttcaaatgttacaaaatataattagtaacatttttctt 34374854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 11936735 - 11936838
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||    
T  11936735 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttt 11936834  T
Q  170 tctt 173  Q
    ||||    
T  11936835 tctt 11936838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 11948715 - 11948818
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  ||||||||||||| || || |||||||||| |||| |||| |||||||||||||||||| ||||    
T  11948715 tgttacagatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttt 11948814  T
Q  170 tctt 173  Q
    ||||    
T  11948815 tctt 11948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 29667899 - 29667987
Alignment:
Q  86 ataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttcttt 174  Q
    ||||||||||||| || || |||| ||||||   || ||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttt 29667987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 9631123 - 9631226
Alignment:
Q  71 gttactgataatactataaaa-tgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    ||||| ||||||||| ||||| ||| ||| ||||| | |||||||| || |||| ||||||||||| ||||||||||||||||||| |||||||| || |    
T  9631123 gttacagataatactctaaaaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttct 9631222  T
Q  170 tctt 173  Q
    ||||    
T  9631223 tctt 9631226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 10070832 - 10070693
Alignment:
Q  25 atacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactat 123  Q
    |||||||||||||||| | ||| ||| || ||  ||| |||| || ||||||  ||||||||||||||||| ||| |||||||| ||||||||||||| |    
T  10070832 atacaaaaagtgttacaataatgtaacatttgcgacacttttaaattgttacaaataatactataaaatgtaactaaaactttt-agtaacacggacttt 10070734  T
Q  124 acctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    || ||||||||  |  | ||||| |||||||||||||||||    
T  10070733 acgtaacaattatttgagtgttattaaatttaattagtaac 10070693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 23904373 - 23904423
Alignment:
Q  123 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  23904373 tacctaacaattgttcaaatgttactaaattgatttagtaacttttttctt 23904423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 2941108 - 2941044
Alignment:
Q  100 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    |||| ||||||||||||  ||| ||||||||| |||||||||||||||||||  |||||||||||    
T  2941108 aaacattttagtaacacaaactttacctaacatttgctcaaatgttactaaacataattagtaac 2941044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 7601321 - 7601395
Alignment:
Q  89 aaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    ||||||||||||||   |||||||||||||||| ||||||||| ||| ||||||||||| | || ||| |||||||    
T  7601321 aaatgttactgaaatcatttagtaacacggactttacctaacatttg-tcaaatgttacaagatctaaatagtaac 7601395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 10935802 - 10935850
Alignment:
Q  123 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 171  Q
    ||||||||||||| ||||||||||||  || ||||||||||| ||||||    
T  10935802 tacctaacaattgttcaaatgttactggatataattagtaacatttttc 10935850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 12190135 - 12189981
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacg 117  Q
    ||||||||||  ||||||||||  ||||||||||   | |||| ||| || |||||||| ||||||||||||||  ||||| ||||| ||||||||||||    
T  12190135 actagtaatatcaaaagtgttaa-aaaatataaacgagtaacactttatatatgttactaataatactataaaaaattactaaaactctttagtaacacg 12190037  T
Q  118 gactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    | || ||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  12190036 ggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttctt 12189981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 51758931 - 51758782
Alignment:
Q  25 atacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactat 123  Q
    |||||||||||||||| | ||| ||| || || |||| ||||||| |||||| |||||||||||||||||| ||| ||||| |||||||| |||  || |    
T  51758931 atacaaaaagtgttacaataatgtaacatttgcaacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaatacgagcttt 51758832  T
Q  124 acctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||| ||||| || | |||| ||||||||||||| |||| ||||||||    
T  51758831 acctaataattgttcgagtgttgctaaatttaattactaacatttttctt 51758782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 3399740 - 3399653
Alignment:
Q  84 ctataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 171  Q
    ||||||| |||||| ||| || ||||||||||  || | ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  3399740 ctataaagtgttaccgaagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttc 3399653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 28637028 - 28636932
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||| ||||||||||||| ||| || || ||||| ||||  |||| ||||||||||||  ||||||||||||||||| |||||||||| ||||||||    
T  28637028 gatattactataaaatgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttctt 28636932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 39368599 - 39368711
Alignment:
Q  62 tttttaaatgttactgataatactat-aaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattag 160  Q
    |||||||||||||||||||||||||| ||||||| |||||| || ||||||| || |  || | |||||||||||   |||||| ||||| |||||||||    
T  39368599 tttttaaatgttactgataatactataaaaatgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattag 39368698  T
Q  161 taacttttttctt 173  Q
    |||| ||||||||    
T  39368699 taacatttttctt 39368711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 16222880 - 16222807
Alignment:
Q  100 aaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| ||||||||||||| || ||||||||||||  |||| ||||||||||||| ||||||||| ||||||||    
T  16222880 aaactctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttctt 16222807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 897594 - 897484
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| ||||||||  |||||  |||||||||| |||  | || |||||||||| | ||| ||||||||||||| |||| |||||||||||||||||||     
T  897594 ttttttaatgttacaaataattgtataaaatgtaactatagctctttagtaacatgaact-tacctaacaattgttcaattgttactaaatttaattagg 897496  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  897495 aacatttttctt 897484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 1844084 - 1843981
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||||||||||||||||  | | || |  || ||||||| ||  | ||||||||||||| ||||||||||||||||| ||| |||||| ||||    
T  1844084 tgttacagataatactataaaatgcaattaaagcccttcagtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaacatttt 1843985  T
Q  170 tctt 173  Q
    ||||    
T  1843984 tctt 1843981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 13208708 - 13208641
Alignment:
Q  106 tttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||||||  | ||||||||||| | |||| || |||||||||||||||||||| ||||||||    
T  13208708 tttagtaacacgggttttacctaacaatggttcaagtggtactaaatttaattagtaacatttttctt 13208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 5911685 - 5911735
Alignment:
Q  123 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| |||| |||||||||||||||| |||||| ||||||||    
T  5911685 tacctaacaattgttcaagtgttactaaatttaatcagtaacatttttctt 5911735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 15214415 - 15214356
Alignment:
Q  114 cacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||| ||| |||| |||||||| |||||| ||||||||||||||||||||  ||||||||    
T  15214415 cacgaactttacccaacaattgttcaaatattactaaatttaattagtaaaatttttctt 15214356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 15204673 - 15204623
Alignment:
Q  123 tacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||| |||| |||||||||||||| |||| ||| ||||||||    
T  15204673 tacctaacaattgttcaagtgttactaaatttagttagcaacatttttctt 15204623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 40613 - 40769
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||||||| ||| ||| || ||| ||| ||||||| |||||| |||||||||||||||||| ||| ||||| ||||||||||     
T  40613 actagtgatacaaaaagtgttacgataatgtaacatttgagacactttttaattgttacagataatactataaaatgtaactaaaactctttagtaacat 40712  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | ||||||||||||||||  |||||||    
T  40713 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttctt 40769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 9242401 - 9242555
Alignment:
Q  20 tagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacgg 118  Q
    |||| |||||||||||||||| | ||| ||| || ||  ||| ||||||| |||||  |||||||||||||||||| ||| ||||| |||||||||| ||    
T  9242401 tagtgatacaaaaagtgttacaataatgtaacatttgcgacactttttaattgttatagataatactataaaatgtaactaaaactctttagtaacatgg 9242500  T
Q  119 actatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||| || |||||||||| |||| |||||| ||||||||||||||||  |||||||    
T  9242501 actttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttctt 9242555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 26701201 - 26701083
Alignment:
Q  30 aaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa 129  Q
    ||||||||||| |||||||||||||| |||| ||| | ||||||||| ||||||| ||||| ||||||||||  | ||||||||||||| || |||||||    
T  26701201 aaaagtgttac-aaaatataaatatgcaacattttctgaatgttactaataatac-ataaagtgttactgaagttatttagtaacacgggctttacctaa 26701104  T
Q  130 caattgctcaaatgttactaa 150  Q
    ||||||  ||| |||||||||    
T  26701103 caattggccaactgttactaa 26701083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 4685371 - 4685474
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    |||||| |||| ||||||||||||| ||| ||||  |||||||| |||| || ||||||||||||| |||| |||| ||||||||||||| |||| ||||    
T  4685371 tgttacagatagtactataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttt 4685470  T
Q  170 tctt 173  Q
    ||||    
T  4685471 tctt 4685474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 26621051 - 26621162
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||| |||||||| |||||||||||||||||| ||| || || |||||||||| ||  | || |||||||||| | ||||||| ||||||||||| |||    
T  26621051 tttttgaatgttacagataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagt 26621150  T
Q  162 aacttttttctt 173  Q
    ||| ||||||||    
T  26621151 aacatttttctt 26621162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 30089859 - 30089764
Alignment:
Q  78 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||||||||||||||| ||| || || |||||||||| || || | ||||||||||| |||||||||||||||| |||| |||||| ||||||||    
T  30089859 ataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttctt 30089764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 3234467 - 3234354
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaa-caattgctcaaatgttactaaatttaattag 160  Q
    ||||| ||||||||| ||||||| || ||||||||||||| || |||||||||||||||| |||||||  ||||| ||||||||||||||||| | ||||    
T  3234467 tttttgaatgttactaataatac-attaaatgttactgaagctatttagtaacacggactttacctaataaattggtcaaatgttactaaattaatttag 3234369  T
Q  161 taacttttttcttta 175  Q
    || | ||||| ||||    
T  3234368 taccattttttttta 3234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 16086611 - 16086525
Alignment:
Q  78 ataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    |||||||||||||||||||||||| || || ||||||| |  || ||||||||||||  |||||||||| |||||||||||||||||    
T  16086611 ataatactataaaatgttactgaagctattaagtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaac 16086525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 10022264 - 10022156
Alignment:
Q  62 tttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagt 161  Q
    ||||||| |||||| |||| || |||||||||| ||| ||| | ||||||||||||  || ||||||||||||| |||  |||||||||| |||||||||    
T  10022264 tttttaattgttacagatagtaatataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagt 10022165  T
Q  162 aactttttt 170  Q
    ||| |||||    
T  10022164 aacattttt 10022156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 26608514 - 26608610
Alignment:
Q  77 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||| ||||||||||||  ||| || || |||||||||| || || || |||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  26608514 gatagtactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttctt 26608610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 20277328 - 20277417
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaatta 159  Q
    |||||| |||||||||||| ||||| ||| || || |||||||||| |  || ||||||||||||| | |||||||||||||||||||||    
T  20277328 tgttacagataatactatataatgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaatta 20277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 26224961 - 26225049
Alignment:
Q  85 tataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||||||  ||| ||||| ||||||||||| | || ||||||| ||||| |||| ||||||||||||||||||||| | ||||||||    
T  26224961 tataaaatgaaactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttctt 26225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 27136061 - 27135957
Alignment:
Q  70 tgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttt 169  Q
    ||||||| ||||||| | ||| |||||| |||||| ||||||||||| | || || |||||||||| |||||||||| || || |||| | |||| ||||    
T  27136061 tgttactaataataccaaaaactgttaccgaaactctttagtaacacaggctttatctaacaattgttcaaatgttattagatataatcaataacatttt 27135962  T
Q  170 tcttt 174  Q
    |||||    
T  27135961 tcttt 27135957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 26205395 - 26205486
Alignment:
Q  82 tactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    |||||| |||||  ||| ||||| |||||||||||   || |||||| |||||  |||| ||||||||||||||||||||||| ||||||||    
T  26205395 tactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttctt 26205486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 16170350 - 16170309
Alignment:
Q  123 tacctaacaattgctcaaatgttactaaatttaattagtaac 164  Q
    ||||||||||||| | || |||||||||||||||||||||||    
T  16170350 tacctaacaattgtttaagtgttactaaatttaattagtaac 16170309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 6844 - 6728
Alignment:
Q  57 aacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaa 156  Q
    |||| ||||| | |||||| |||| ||||||||||||| ||| |||| |||||||||||| | || ||||||||||||| |||| |||| ||||||||||    
T  6844 aacactttttgattgttacagatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaa 6745  T
Q  157 ttagtaacttttttctt 173  Q
    |||||||| ||||||||    
T  6744 ttagtaacatttttctt 6728  T

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Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 446211 - 446345
Alignment:
Q  29 aaaaagtgttacgaaaatataaatatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacacggactataccta 128  Q
    |||||||||||| |||||| ||||| | |||| ||||| |||||||||  || ||||||||| ||||||| || || |||||||| | ||||| | ||||    
T  446211 aaaaagtgttac-aaaatacaaataggtaacatttttttaatgttactactactactataaagtgttactaaagctctttagtaatatggacttttccta 446309  T
Q  129 acaattgctcaaatgttactaaatttaattagtaac 164  Q
    ||||||| ||||||||||| |||||||||| |||||    
T  446310 acaattgttcaaatgttaccaaatttaattggtaac 446345  T

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Target: scaffold0684 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 662 - 818
Alignment:
Q  18 actagtaatacaaaaagtgttacgaaaatataa-atatgaaacagtttttaaatgttactgataatactataaaatgttactgaaactttttagtaacac 116  Q
    |||||| |||||||||||||| | | ||| ||| || ||  ||| ||||||| |||||  |||||||||||||||||| ||| ||||| ||||||||||     
T  662 actagtgatacaaaaagtgttccaataatgtaacatttgcgacactttttaattgttatagataatactataaaatgtaactaaaactctttagtaacat 761  T
Q  117 ggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttctt 173  Q
    ||||| || |||||||||| || | |||| | ||||||||||||||||  |||||||    
T  762 ggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttctt 818  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 8892 - 8845
Alignment:
Q  31 aaagtgttacgaaaatataaatatgaaacagtttttaaatgttactga 78  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  8892 aaagtgttacgaaaatataaataagcaacattttttgaatgttactga 8845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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