View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_high_7 (Length: 364)
Name: NF21181_high_7
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 47669869 - 47670108
Alignment:
| Q |
22 |
ttataattagcacacatttagatcgatccttatcttatttgaaatatactaatgaatacttttctagagcaaggtatgtacttcaatttgtgaatgattt |
121 |
Q |
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| T |
47669869 |
ttatgattagcacacatttagattgatccttatcttatttgaagtatgctaatgaatattttac---agca---------ctccaatttataaatgattt |
47669956 |
T |
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| Q |
122 |
gacatacattaatcctg---gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctg |
218 |
Q |
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| T |
47669957 |
gacatacattaatcctgtaagttcatacaccgtagacattcttatcatgttaatttgaaagtttcgtaatgattttggccacttgaagagcatgttgctg |
47670056 |
T |
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| Q |
219 |
tgtgaagctacttcatcgagtttccctcattctacattgctaactcatgtta |
270 |
Q |
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| T |
47670057 |
cgtgaagcttcttcatcatatttccctcattctaaattgctaacttatgtta |
47670108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 47671476 - 47671527
Alignment:
| Q |
293 |
tgaatatgaaatgttcttttccgagctacatatatgattccatgttaatacat |
345 |
Q |
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| T |
47671476 |
tgaatatgaaatgtt-tttcccgagctccatatatgattctatgtcaatacat |
47671527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 8747695 - 8747565
Alignment:
| Q |
139 |
gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctgtgtgaagctacttcatcgag |
238 |
Q |
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| T |
8747695 |
gttcacacaccgtggacattcatatcatgttaatttgaaagtctcatcatggttttggccccttgaagagcatgttgctacgtgaagcttcttcatcaaa |
8747596 |
T |
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| Q |
239 |
tttccctcattctacattgctaactcatgtt |
269 |
Q |
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| T |
8747595 |
tttccctcattctacattgctaactaatgtt |
8747565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 25798200 - 25798268
Alignment:
| Q |
278 |
ttttcaaggttcaaatgaatatgaaatgttcttttccga-gctacatatatgattccatgttaatacat |
345 |
Q |
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| T |
25798200 |
ttttcaaggatcaaatgaatatgacatgttttttttctaagctacatatatgattctatgttaatacat |
25798268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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