View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21181_low_10 (Length: 348)
Name: NF21181_low_10
Description: NF21181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21181_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 34565746 - 34565570
Alignment:
| Q |
158 |
tgttcaacgaccttattcgtttttgccaattcttcctgaagttgatctctttcatttctcatttcttcaagctcgtgcctttgcacccactcggttgaag |
257 |
Q |
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| T |
34565746 |
tgttcaacgaccttattcgtttttgccaattcttcctgaagttgatctctttcatttctcatttgttcaagctcgtgcctttgcacccactcggatgaag |
34565647 |
T |
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| Q |
258 |
aagaaccagagccacgataatttggacgtcttgctagtacagaggatcccattccaagaccatatattatcctttct |
334 |
Q |
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| T |
34565646 |
aagaaccagagccatgataatttggacgtcttgctagtacagaggatcccattccaagaccatatattatcctttct |
34565570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 34565943 - 34565788
Alignment:
| Q |
2 |
aatactaatccaaagagatttatgaattaacaaaaaacatcaaattatctattcaggaacattttgtgattccaaatctaacttgtcatcaaccacatca |
101 |
Q |
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| T |
34565943 |
aatactaatccaaagagatttatgaattaacaaaacacatcaaattatctattcaggaacattttgtgcttccaaatctaacttgtcatcaaccacatta |
34565844 |
T |
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| Q |
102 |
tcattagtttggtcttcctcattcgcttggtctatagaatgttggatgggttggaa |
157 |
Q |
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| T |
34565843 |
tcattagtttggtcttcctcattggcttggtctatagaatgttggatgggttggaa |
34565788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 36092183 - 36092099
Alignment:
| Q |
198 |
gttgatctctttcatttctcatttcttcaagctcgtgcctttgcacccactcggttgaagaagaaccagagccacgataatttgg |
282 |
Q |
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| T |
36092183 |
gttgatctctttcatttctcatttcttcaagttcatgtctttgtacccactcagttgatgaagaacatgagccacgataatttgg |
36092099 |
T |
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